Aop_g01386 (GAMMA-ADAPTIN 1, Gamma-ADR)

Aliases : GAMMA-ADAPTIN 1, Gamma-ADR

Description : large subunit gamma of AP-1 trans-Golgi network cargo adaptor complex & original description: none

Gene families : OG0002603 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002603_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g01386

Target	Alias	Description	ECC score	Gene Family Method
AT1G23900	GAMMA-ADAPTIN 1,...	gamma-adaptin 1	0.03	OrthoFinder output from all 47 species
Aev_g07309	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species
Ala_g14098	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species
Als_g14323	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species
Aob_g02329	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Azfi_s0005.g009317	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Cba_g15244	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Ceric.1Z105200.1	Ceric.1Z105200	large subunit gamma of AP-1 trans-Golgi network cargo...	0.04	OrthoFinder output from all 47 species
Ceric.37G015500.1	GAMMA-ADAPTIN 1,...	not classified & original description: pacid=50616075...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000217.33	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.02	OrthoFinder output from all 47 species
Cre16.g676650	GAMMA-ADAPTIN 1,...	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.02	OrthoFinder output from all 47 species
Dac_g03415	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Dac_g04254	GAMMA-ADAPTIN 1,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g01942	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species
GSVIVT01020209001	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.06	OrthoFinder output from all 47 species
Gb_02741	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
LOC_Os06g07090.1	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species
Len_g40020	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.04	OrthoFinder output from all 47 species
Lfl_g22120	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Mp2g02140.1	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.04	OrthoFinder output from all 47 species
Msp_g09172	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species
Nbi_g04417	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Ore_g15695	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Pnu_g06469	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0105.g020158	No alias	large subunit gamma of AP-1 trans-Golgi network cargo...	0.04	OrthoFinder output from all 47 species
Smo168054	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.03	OrthoFinder output from all 47 species
Solyc04g025870.4.1	Solyc04g025870	large subunit gamma of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Solyc05g005780.3.1	Solyc05g005780	large subunit gamma of AP-1 trans-Golgi network cargo...	0.04	OrthoFinder output from all 47 species
Tin_g02865	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Zm00001e023661_P002	GAMMA-ADAPTIN 1,...	large subunit gamma of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Zm00001e030101_P002	Zm00001e030101	large subunit gamma of AP-1 trans-Golgi network cargo...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000149	SNARE binding	IEP	HCCA
BP	GO:0000381	regulation of alternative mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003714	transcription corepressor activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016556	mRNA modification	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
MF	GO:0019905	syntaxin binding	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
MF	GO:0032182	ubiquitin-like protein binding	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
MF	GO:0043130	ubiquitin binding	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043484	regulation of RNA splicing	IEP	HCCA
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0050684	regulation of mRNA processing	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
MF	GO:0070001	aspartic-type peptidase activity	IEP	HCCA
BP	GO:0080009	mRNA methylation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:1903311	regulation of mRNA metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008152	Clathrin_a/b/g-adaptin_app_Ig	788	901
IPR002553	Clathrin/coatomer_adapt-like_N	22	572

External Links

No external refs found!

Aop_g01386 (GAMMA-ADAPTIN 1, Gamma-ADR)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation