Aop_g00272


Description : component *(cS23) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0003343 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003343_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g00272
Cluster HCCA: Cluster_322

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00055110 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
AT1G68590 No alias Ribosomal protein PSRP-3/Ycf65 0.04 OrthoFinder output from all 47 species
Ala_g00515 No alias component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aob_g08130 No alias component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0052.g031601 No alias component *(cS23) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ceric.29G082200.1 Ceric.29G082200 component *(cS23) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Cre02.g083950 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
GSVIVT01031053001 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
LOC_Os04g38750.1 LOC_Os04g38750 component psPSRP3 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Lfl_g39341 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10432955g0010 No alias component psPSRP3 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
MA_19834g0010 No alias component psPSRP3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Mp2g13520.1 No alias component psPSRP3 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Nbi_g11062 No alias component *(cS23) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ore_g05910 No alias component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Sam_g23730 No alias component *(cS23) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Solyc03g034190.3.1 Solyc03g034190 component psPSRP3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Solyc05g009570.3.1 Solyc05g009570 component psPSRP3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species
Spa_g01460 No alias component *(cS23) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Zm00001e041019_P001 Zm00001e041019 component psPSRP3 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006924 Ribosomal_PSRP3/Ycf65 105 151
No external refs found!