Description : component *(cS23) of small plastid ribosomal-subunit proteome & original description: none
Gene families : OG0003343 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003343_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Aop_g00272 | |
Cluster | HCCA: Cluster_322 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00010p00055110 | evm_27.TU.AmTr_v1... | Protein biosynthesis.organelle translation... | 0.03 | OrthoFinder output from all 47 species | |
AT1G68590 | No alias | Ribosomal protein PSRP-3/Ycf65 | 0.04 | OrthoFinder output from all 47 species | |
Ala_g00515 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Aob_g08130 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0052.g031601 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.29G082200.1 | Ceric.29G082200 | component *(cS23) of small plastid ribosomal-subunit... | 0.07 | OrthoFinder output from all 47 species | |
Cre02.g083950 | No alias | Protein biosynthesis.organelle translation... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01031053001 | No alias | Protein biosynthesis.organelle translation... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os04g38750.1 | LOC_Os04g38750 | component psPSRP3 of small ribosomal subunit proteome | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g39341 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
MA_10432955g0010 | No alias | component psPSRP3 of small ribosomal subunit proteome | 0.02 | OrthoFinder output from all 47 species | |
MA_19834g0010 | No alias | component psPSRP3 of small ribosomal subunit proteome | 0.03 | OrthoFinder output from all 47 species | |
Mp2g13520.1 | No alias | component psPSRP3 of small ribosomal subunit proteome | 0.05 | OrthoFinder output from all 47 species | |
Nbi_g11062 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
Ore_g05910 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g23730 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
Solyc03g034190.3.1 | Solyc03g034190 | component psPSRP3 of small ribosomal subunit proteome | 0.03 | OrthoFinder output from all 47 species | |
Solyc05g009570.3.1 | Solyc05g009570 | component psPSRP3 of small ribosomal subunit proteome | 0.03 | OrthoFinder output from all 47 species | |
Spa_g01460 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e041019_P001 | Zm00001e041019 | component psPSRP3 of small ribosomal subunit proteome | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
MF | GO:0004853 | uroporphyrinogen decarboxylase activity | IEP | HCCA |
BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | HCCA |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | HCCA |
MF | GO:0016829 | lyase activity | IEP | HCCA |
MF | GO:0016830 | carbon-carbon lyase activity | IEP | HCCA |
MF | GO:0016831 | carboxy-lyase activity | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR006924 | Ribosomal_PSRP3/Ycf65 | 105 | 151 |
No external refs found! |