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  5. Lfl_g08397

Lfl_g08397 (VPS35B)


Aliases : VPS35B

Description : component *(VPS35) of Retromer protein recycling complex & original description: none


Gene families : OG0003496 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003496_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g08397
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AT2G17790 ZIP3, VPS35A VPS35 homolog A 0.03 OrthoFinder output from all 47 species
AT3G51310 VPS35C VPS35 homolog C 0.03 OrthoFinder output from all 47 species
Adi_g011699 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.03 OrthoFinder output from all 47 species
Aev_g16183 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.08 OrthoFinder output from all 47 species
Ala_g07415 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.04 OrthoFinder output from all 47 species
Als_g17864 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.03 OrthoFinder output from all 47 species
Aob_g02341 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.03 OrthoFinder output from all 47 species
Ceric.32G026000.1 VPS35B, Ceric.32G026000 component *(VPS35) of Retromer protein recycling complex... 0.06 OrthoFinder output from all 47 species
Cre01.g029650 ZIP3, VPS35A Vesicle trafficking.endomembrane trafficking.protein... 0.05 OrthoFinder output from all 47 species
Dcu_g44008 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.09 OrthoFinder output from all 47 species
Dde_g10908 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.05 OrthoFinder output from all 47 species
GSVIVT01009948001 VPS35B Vesicle trafficking.endomembrane trafficking.protein... 0.08 OrthoFinder output from all 47 species
GSVIVT01018728001 VPS35B Vesicle trafficking.endomembrane trafficking.protein... 0.05 OrthoFinder output from all 47 species
Gb_38584 VPS35B component VPS35 of Retromer protein recycling complex 0.03 OrthoFinder output from all 47 species
LOC_Os03g58700.1 VPS35B, LOC_Os03g58700 component VPS35 of Retromer protein recycling complex 0.1 OrthoFinder output from all 47 species
MA_9038g0010 ZIP3, VPS35A component VPS35 of Retromer protein recycling complex 0.05 OrthoFinder output from all 47 species
MA_9038g0020 ZIP3, VPS35A component VPS35 of Retromer protein recycling complex 0.04 OrthoFinder output from all 47 species
Mp3g20440.1 VPS35B component VPS35 of Retromer protein recycling complex 0.03 OrthoFinder output from all 47 species
Nbi_g11981 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.03 OrthoFinder output from all 47 species
Ore_g08613 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.02 OrthoFinder output from all 47 species
Ppi_g04632 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.04 OrthoFinder output from all 47 species
Sam_g29536 No alias component *(VPS35) of Retromer protein recycling complex... 0.02 OrthoFinder output from all 47 species
Solyc02g083560.3.1 ZIP3, VPS35A,... component VPS35 of Retromer protein recycling complex 0.11 OrthoFinder output from all 47 species
Solyc03g033400.4.1 ZIP3, VPS35A,... component VPS35 of Retromer protein recycling complex 0.07 OrthoFinder output from all 47 species
Solyc12g089340.2.1 VPS35B, Solyc12g089340 component VPS35 of Retromer protein recycling complex 0.04 OrthoFinder output from all 47 species
Spa_g15075 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.05 OrthoFinder output from all 47 species
Tin_g02135 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.04 OrthoFinder output from all 47 species
Zm00001e006031_P002 VPS35B, Zm00001e006031 component VPS35 of Retromer protein recycling complex 0.08 OrthoFinder output from all 47 species
Zm00001e011849_P003 VPS35B, Zm00001e011849 component VPS35 of Retromer protein recycling complex 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA Interproscan
CC GO:0030906 retromer, cargo-selective complex IEA Interproscan
BP GO:0042147 retrograde transport, endosome to Golgi IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004143 diacylglycerol kinase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR005378 Vps35 19 753
No external refs found!