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  5. Lfl_g05758

Lfl_g05758 (GTB1)


Aliases : GTB1

Description : component *(SPT6) of SPT6-IWS1 transcription elongation complex & original description: none


Gene families : OG0001807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001807_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g05758
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AT1G65440 GTB1 global transcription factor group B1 0.07 OrthoFinder output from all 47 species
Adi_g055496 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.07 OrthoFinder output from all 47 species
Adi_g060511 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.06 OrthoFinder output from all 47 species
Aev_g43821 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Ala_g25347 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.11 OrthoFinder output from all 47 species
Ala_g37718 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.05 OrthoFinder output from all 47 species
Als_g14097 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Als_g61446 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.08 OrthoFinder output from all 47 species
Aob_g17694 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Aob_g20381 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Aop_g31491 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Azfi_s0254.g060416 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Cba_g24284 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Ceric.21G005900.1 GTB1, Ceric.21G005900 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001486.8 GTB1 Chromatin organisation.histone chaperone... 0.02 OrthoFinder output from all 47 species
Cre09.g403182 GTB1 Chromatin organisation.histone chaperone... 0.04 OrthoFinder output from all 47 species
Dac_g22241 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Dcu_g14255 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.07 OrthoFinder output from all 47 species
Dcu_g19973 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.07 OrthoFinder output from all 47 species
Dde_g17217 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
GSVIVT01025815001 GTB1 Chromatin organisation.histone chaperone... 0.05 OrthoFinder output from all 47 species
Gb_29261 GTB1 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.05 OrthoFinder output from all 47 species
LOC_Os05g41510.1 GTB1, LOC_Os05g41510 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.04 OrthoFinder output from all 47 species
Len_g19196 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.12 OrthoFinder output from all 47 species
MA_13648g0020 GTB1 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.05 OrthoFinder output from all 47 species
Mp2g25720.1 GTB1 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.03 OrthoFinder output from all 47 species
Msp_g42177 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Msp_g43712 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.06 OrthoFinder output from all 47 species
Nbi_g05486 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Nbi_g34788 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Ore_g08934 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.08 OrthoFinder output from all 47 species
Pir_g03432 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.05 OrthoFinder output from all 47 species
Ppi_g60722 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Sam_g13993 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.08 OrthoFinder output from all 47 species
Smo164675 GTB1 Chromatin organisation.histone chaperone... 0.07 OrthoFinder output from all 47 species
Solyc10g081020.2.1 GTB1, Solyc10g081020 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.02 OrthoFinder output from all 47 species
Spa_g16432 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.05 OrthoFinder output from all 47 species
Spa_g47531 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Tin_g02913 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.1 OrthoFinder output from all 47 species
Tin_g21814 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.05 OrthoFinder output from all 47 species
Zm00001e032018_P003 GTB1, Zm00001e032018 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030259 lipid glycosylation IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032706 Spt6_HHH 923 1024
IPR028083 Spt6_acidic_N_dom 32 124
IPR003029 S1_domain 1153 1223
IPR028231 Spt6_YqgF 761 916
IPR041692 HHH_9 1038 1128
IPR035420 Spt6_SH2 1251 1458
No external refs found!