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  5. Lfl_g05647

Lfl_g05647 (CSB3, CLB4, GCPE, HDS, ISPG)


Aliases : CSB3, CLB4, GCPE, HDS, ISPG

Description : 4-hydroxy-3-methylbut-2-enyl diphosphate synthase & original description: none


Gene families : OG0004404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004404_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g05647

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00175p00057810 CSB3, CLB4,... Secondary metabolism.terpenoids.methylerythritol... 0.04 OrthoFinder output from all 47 species
AT5G60600 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.07 OrthoFinder output from all 47 species
Aop_g14403 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.02 OrthoFinder output from all 47 species
Azfi_s0155.g053656 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.07 OrthoFinder output from all 47 species
Cba_g71707 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.02 OrthoFinder output from all 47 species
Cre12.g490350 CSB3, CLB4,... Secondary metabolism.terpenoids.methylerythritol... 0.05 OrthoFinder output from all 47 species
Dac_g01725 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.03 OrthoFinder output from all 47 species
Dde_g07326 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.03 OrthoFinder output from all 47 species
GSVIVT01025182001 CSB3, CLB4,... Secondary metabolism.terpenoids.methylerythritol... 0.03 OrthoFinder output from all 47 species
Gb_01895 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.03 OrthoFinder output from all 47 species
LOC_Os02g39160.1 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.03 OrthoFinder output from all 47 species
Len_g16087 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.03 OrthoFinder output from all 47 species
Mp5g09870.1 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.04 OrthoFinder output from all 47 species
Nbi_g10591 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.03 OrthoFinder output from all 47 species
Pir_g09734 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.04 OrthoFinder output from all 47 species
Smo149035 CSB3, CLB4,... Secondary metabolism.terpenoids.methylerythritol... 0.02 OrthoFinder output from all 47 species
Tin_g02819 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.02 OrthoFinder output from all 47 species
Zm00001e015046_P001 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016114 terpenoid biosynthetic process IEA Interproscan
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR004588 IspG_bac-typ 97 738
No external refs found!