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  5. Lfl_g04999

Lfl_g04999


Description : not classified & original description: none


Gene families : OG0007491 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007491_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g04999

Target Alias Description ECC score Gene Family Method Actions
Adi_g105487 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0099.g043991 OTP84 not classified & original description: CDS=230-3472 0.03 OrthoFinder output from all 47 species
Cba_g13501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G004500.1 Ceric.02G004500 not classified & original description: pacid=50584632... 0.04 OrthoFinder output from all 47 species
Ceric.15G002000.1 Ceric.15G002000 not classified & original description: pacid=50640344... 0.07 OrthoFinder output from all 47 species
Ceric.17G084700.1 Ceric.17G084700 not classified & original description: pacid=50618199... 0.06 OrthoFinder output from all 47 species
Dac_g10625 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g03497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21687 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g15780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13553 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009384 No alias not classified & original description: CDS=123-3881 0.02 OrthoFinder output from all 47 species
Sam_g08396 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g09082 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21963 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 273 300
IPR002885 Pentatricopeptide_repeat 549 573
IPR002885 Pentatricopeptide_repeat 746 768
IPR002885 Pentatricopeptide_repeat 374 404
IPR032867 DYW_dom 1081 1160
IPR002885 Pentatricopeptide_repeat 774 820
IPR002885 Pentatricopeptide_repeat 875 920
IPR002885 Pentatricopeptide_repeat 472 520
IPR002885 Pentatricopeptide_repeat 679 720
IPR002885 Pentatricopeptide_repeat 577 620
No external refs found!