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  5. Ala_g22344

Ala_g22344 (APUM24, PUM24)


Aliases : APUM24, PUM24

Description : rRNA processing factor involved in ITS2 rRNA removal *(APUM24) & original description: none


Gene families : OG0004290 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004290_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g22344

Target Alias Description ECC score Gene Family Method Actions
Ceric.08G042900.1 APUM24, PUM24,... rRNA processing factor involved in ITS2 rRNA removal... 0.03 OrthoFinder output from all 47 species
Cre12.g528950 APUM24, PUM24 Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Mp7g01710.1 APUM24, PUM24 APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.03 OrthoFinder output from all 47 species
Pir_g12537 APUM24, PUM24 rRNA processing factor involved in ITS2 rRNA removal... 0.05 OrthoFinder output from all 47 species
Sam_g40242 No alias rRNA processing factor involved in ITS2 rRNA removal... 0.04 OrthoFinder output from all 47 species
Solyc01g065580.4.1 APUM24, PUM24,... APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.03 OrthoFinder output from all 47 species
Zm00001e006271_P002 APUM24, PUM24,... APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030259 lipid glycosylation IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR012959 CPL_dom 493 600
IPR001313 Pumilio_RNA-bd_rpt 156 178
IPR001313 Pumilio_RNA-bd_rpt 371 385
No external refs found!