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  5. Ala_g20441

Ala_g20441


Description : not classified & original description: none


Gene families : OG0000402 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000402_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g20441
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene15069.t1 Aspi01Gene15069 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25981.t1 Aspi01Gene25981 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G075300.1 Ceric.04G075300 not classified & original description: pacid=50631416... 0.03 OrthoFinder output from all 47 species
Dcu_g09002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16965 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp6g21090.2 No alias PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Msp_g13351 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g08484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22402 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e032904_P002 Zm00001e032904 PHD finger transcription factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 1213 1262
IPR008395 Agenet-like_dom 35 125
No external refs found!