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  5. Ala_g13456

Ala_g13456 (CLO, GFA1, MEE5)


Aliases : CLO, GFA1, MEE5

Description : component *(CLO/SNU114/MAC11) of MAC spliceosome-associated complex & original description: none


Gene families : OG0005717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g13456
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AT1G06220 CLO, GFA1, MEE5 Ribosomal protein S5/Elongation factor G/III/V family protein 0.05 OrthoFinder output from all 47 species
Adi_g088502 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.03 OrthoFinder output from all 47 species
Adi_g103607 CLO, GFA1, MEE5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09606 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.03 OrthoFinder output from all 47 species
Ceric.11G055700.1 CLO, GFA1, MEE5,... component *(CLO/SNU114/MAC11) of MAC... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020904.69 CLO, GFA1, MEE5 RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Dcu_g06490 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.03 OrthoFinder output from all 47 species
Dde_g20963 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.04 OrthoFinder output from all 47 species
Ehy_g20814 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.04 OrthoFinder output from all 47 species
GSVIVT01012881001 CLO, GFA1, MEE5 RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Gb_08962 CLO, GFA1, MEE5 protein factor SNU114/U5-116kDa of U5 small nuclear... 0.05 OrthoFinder output from all 47 species
LOC_Os06g40600.1 CLO, GFA1, MEE5,... protein factor SNU114/U5-116kDa of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
Len_g08811 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.03 OrthoFinder output from all 47 species
Lfl_g07092 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.04 OrthoFinder output from all 47 species
MA_10434191g0010 CLO, GFA1, MEE5 110 kDa U5 small nuclear ribonucleoprotein component CLO... 0.06 OrthoFinder output from all 47 species
MA_931263g0010 CLO, GFA1, MEE5 protein factor SNU114/U5-116kDa of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
Mp8g11140.1 CLO, GFA1, MEE5 protein factor SNU114/U5-116kDa of U5 small nuclear... 0.07 OrthoFinder output from all 47 species
Sam_g30417 No alias component *(CLO/SNU114/MAC11) of MAC... 0.02 OrthoFinder output from all 47 species
Smo231460 CLO, GFA1, MEE5 RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Solyc07g007210.3.1 CLO, GFA1, MEE5,... protein factor SNU114/U5-116kDa of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
Spa_g01974 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.03 OrthoFinder output from all 47 species
Zm00001e037442_P001 CLO, GFA1, MEE5,... protein factor SNU114/U5-116kDa of U5 small nuclear... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000795 T_Tr_GTP-bd_dom 146 349
IPR004161 EFTu-like_2 512 586
IPR005517 Transl_elong_EFG/EF2_IV 727 843
IPR031950 EFTUD2_N 4 122
IPR000640 EFG_V-like 846 934
No external refs found!