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  5. Ala_g13229

Ala_g13229 (RKP)


Aliases : RKP

Description : E3 ubiquitin ligase *(RKP) & original description: none


Gene families : OG0003375 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003375_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ala_g13229
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
Adi_g011552 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.08 OrthoFinder output from all 47 species
Aev_g01602 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g16131 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06774 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene09679.t1 RKP, Aspi01Gene09679 E3 ubiquitin ligase *(RKP) & original description: none 0.07 OrthoFinder output from all 47 species
Azfi_s0043.g026953 RKP E3 ubiquitin ligase *(RKP) & original description: CDS=511-4113 0.02 OrthoFinder output from all 47 species
Cba_g17418 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.30G032900.1 RKP, Ceric.30G032900 E3 ubiquitin ligase *(RKP) & original description:... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020927.11 RKP E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g09317 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g00981 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01022217001 RKP E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Len_g08871 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g05025 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.11 OrthoFinder output from all 47 species
MA_10429186g0010 RKP E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_61184g0010 RKP E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp6g14830.1 RKP E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
Msp_g15472 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g08940 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g13055 RKP E3 ubiquitin ligase *(RKP) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g054140.4.1 RKP, Solyc04g054140 E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Tin_g08746 RKP E3 ubiquiTin ligase *(RKP) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035603_P001 RKP, Zm00001e035603 E3 ubiquitin-protein ligase RKP OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR045737 RKP_N 11 138
IPR003877 SPRY_dom 149 267
No external refs found!