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  5. Msp_g46099

Msp_g46099


Description : not classified & original description: none


Gene families : OG0016943 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0016943_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g46099
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
Dac_g03848 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57216 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g10755 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47797 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000347 THO complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 480 528
IPR002885 Pentatricopeptide_repeat 379 426
IPR002885 Pentatricopeptide_repeat 279 325
IPR002885 Pentatricopeptide_repeat 78 104
IPR002885 Pentatricopeptide_repeat 152 174
IPR002885 Pentatricopeptide_repeat 861 887
IPR002885 Pentatricopeptide_repeat 789 818
IPR002885 Pentatricopeptide_repeat 455 478
IPR002885 Pentatricopeptide_repeat 688 718
IPR002885 Pentatricopeptide_repeat 180 209
IPR002885 Pentatricopeptide_repeat 889 919
IPR002885 Pentatricopeptide_repeat 604 633
No external refs found!