Msp_g38787 (BBC1, RSU2, ATBBC1)


Aliases : BBC1, RSU2, ATBBC1

Description : component *(eL13) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000911 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000911_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g38787
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Ceric.06G067700.1 BBC1, RSU2,... component *(eL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ceric.21G071200.1 BBC1, RSU2,... component *(eL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020629.36 BBC1, RSU2, ATBBC1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Ehy_g02110 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01027212001 BBC1, RSU2, ATBBC1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01030767001 BBC1, RSU2, ATBBC1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Mp1g04920.1 BBC1, RSU2, ATBBC1 component RPL13 of LSU proteome component 0.01 OrthoFinder output from all 47 species
Mp2g19790.1 BBC1, RSU2, ATBBC1 component RPL13 of LSU proteome component 0.01 OrthoFinder output from all 47 species
Ore_g11184 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c1_26280V3.1 BBC1, RSU2,... breast basic conserved 1 0.02 OrthoFinder output from all 47 species
Sam_g20834 No alias component *(eL13) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Solyc08g075700.3.1 BBC1, RSU2,... component RPL13 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc12g096150.2.1 BBC1, RSU2,... component RPL13 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Spa_g05295 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Spa_g31672 BBC1, RSU2, ATBBC1 component *(eL13) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e018804_P001 BBC1, RSU2,... component RPL13 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Zm00001e031172_P001 BBC1, RSU2,... component RPL13 of LSU proteome component 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004568 chitinase activity IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006026 aminoglycan catabolic process IEP HCCA
BP GO:0006030 chitin metabolic process IEP HCCA
BP GO:0006032 chitin catabolic process IEP HCCA
BP GO:0006040 amino sugar metabolic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046348 amino sugar catabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:1901071 glucosamine-containing compound metabolic process IEP HCCA
BP GO:1901072 glucosamine-containing compound catabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001380 Ribosomal_L13e 6 133
No external refs found!