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  5. Msp_g18920

Msp_g18920 (ATHDA14, hda14)


Aliases : ATHDA14, hda14

Description : class-II histone deacetylase & original description: none


Gene families : OG0006068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g18920
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AT4G33470 ATHDA14, hda14 histone deacetylase 14 0.03 OrthoFinder output from all 47 species
Als_g53688 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.08 OrthoFinder output from all 47 species
Cba_g04565 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g00560 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os12g08220.1 ATHDA14, hda14,... class-II histone deacetylase 0.02 OrthoFinder output from all 47 species
Mp1g01300.1 ATHDA14, hda14 class-II histone deacetylase 0.03 OrthoFinder output from all 47 species
Pir_g19601 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06418 ATHDA14, hda14 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
Smo448239 ATHDA14, hda14 Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
Solyc01g009120.3.1 ATHDA14, hda14,... class-II histone deacetylase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 98 402
No external refs found!