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  5. Msp_g13656

Msp_g13656


Description : not classified & original description: none


Gene families : OG0005532 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005532_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g13656
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00184200 evm_27.TU.AmTr_v1... BEACH domain-containing protein C2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00069p00185250 evm_27.TU.AmTr_v1... BEACH domain-containing protein C2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT2G45540 No alias WD-40 repeat family protein / beige-related 0.06 OrthoFinder output from all 47 species
Adi_g107386 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02732 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g08158 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g23718 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene29586.t1 Aspi01Gene29586 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11295 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g50882 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12497 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01027547001 No alias BEACH domain-containing protein C2 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_14861 No alias BEACH domain-containing protein C2 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
LOC_Os04g46892.1 LOC_Os04g46892 BEACH domain-containing protein C2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g46894.1 LOC_Os04g46894 BEACH domain-containing protein C2 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Len_g29845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_124819g0010 No alias BEACH domain-containing protein C2 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
MA_16421g0010 No alias BEACH domain-containing protein C2 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Mp6g16270.1 No alias BEACH domain-containing protein C2 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Nbi_g08434 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g16690 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g08777 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Solyc01g094060.4.1 Solyc01g094060 BEACH domain-containing protein C2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e007294_P001 Zm00001e007294 BEACH domain-containing protein C2 OS=Arabidopsis... 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0003972 RNA ligase (ATP) activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008452 RNA ligase activity IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR023362 PH-BEACH_dom 2430 2529
IPR001680 WD40_repeat 2987 3019
IPR000409 BEACH_dom 2557 2833
IPR031570 NBEA/BDCP_DUF4704 1457 1581
IPR031570 NBEA/BDCP_DUF4704 925 1240
No external refs found!