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  5. Msp_g08411

Msp_g08411


Description : regulatory factor *(RIQ) of thylakoid grana stacking & original description: none


Gene families : OG0004759 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004759_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g08411
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AT5G08050 No alias Protein of unknown function (DUF1118) 0.09 OrthoFinder output from all 47 species
Adi_g021665 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.17 OrthoFinder output from all 47 species
Adi_g046840 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.11 OrthoFinder output from all 47 species
Aev_g00608 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.04 OrthoFinder output from all 47 species
Aev_g10172 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.07 OrthoFinder output from all 47 species
Ala_g00963 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.09 OrthoFinder output from all 47 species
Als_g04124 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.1 OrthoFinder output from all 47 species
Aob_g09320 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.05 OrthoFinder output from all 47 species
Aop_g09516 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.19 OrthoFinder output from all 47 species
Aspi01Gene19483.t1 Aspi01Gene19483 regulatory factor *(RIQ) of thylakoid grana stacking &... 0.07 OrthoFinder output from all 47 species
Azfi_s0038.g026304 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.06 OrthoFinder output from all 47 species
Cba_g04313 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.09 OrthoFinder output from all 47 species
Ceric.34G020000.1 Ceric.34G020000 regulatory factor *(RIQ) of thylakoid grana stacking &... 0.14 OrthoFinder output from all 47 species
Dac_g00528 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.11 OrthoFinder output from all 47 species
Dcu_g47527 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.03 OrthoFinder output from all 47 species
Dde_g01981 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.14 OrthoFinder output from all 47 species
Ehy_g02092 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.12 OrthoFinder output from all 47 species
GSVIVT01008106001 No alias No description available 0.15 OrthoFinder output from all 47 species
Gb_03565 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os12g38640.1 LOC_Os12g38640 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Len_g11447 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.15 OrthoFinder output from all 47 species
Len_g44742 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.04 OrthoFinder output from all 47 species
Lfl_g03718 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.06 OrthoFinder output from all 47 species
MA_114154g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp1g29140.1 No alias no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Nbi_g08483 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.08 OrthoFinder output from all 47 species
Ore_g09667 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.05 OrthoFinder output from all 47 species
Pir_g59758 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.14 OrthoFinder output from all 47 species
Pnu_g10046 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.09 OrthoFinder output from all 47 species
Ppi_g30016 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0091.g018867 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.05 OrthoFinder output from all 47 species
Sam_g23850 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.03 OrthoFinder output from all 47 species
Smo415599 No alias No description available 0.07 OrthoFinder output from all 47 species
Solyc03g115020.3.1 Solyc03g115020 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g03718 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.15 OrthoFinder output from all 47 species
Spa_g04667 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.08 OrthoFinder output from all 47 species
Tin_g15216 No alias regulatory factor *(RIQ) of thylakoid grana stacking &... 0.1 OrthoFinder output from all 47 species
Zm00001e002989_P001 Zm00001e002989 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR009500 DUF1118 93 205
No external refs found!