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  5. Msp_g05637

Msp_g05637 (HSP93-V, DCA1,...)


Aliases : HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1

Description : chaperone component *(ClpC) of chloroplast Clp-type protease complex & original description: none


Gene families : OG0000193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g05637

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00164160 HSP93-V, DCA1,... External stimuli response.temperature.Hsp... 0.03 OrthoFinder output from all 47 species
AT5G50920 HSP93-V, DCA1,... CLPC homologue 1 0.03 OrthoFinder output from all 47 species
Adi_g088541 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Ala_g11691 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Ala_g12182 CLPB3, CLPB-P, APG6 organellar chaperone *(Clp-p/Clp-m) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g06718 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Aob_g07406 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.02 OrthoFinder output from all 47 species
Aob_g16301 SAG15, CLPD, ERD1 chaperone component *(ClpD) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Aob_g42026 ATHSP101, HOT1, HSP101 cytosolic chaperone *(Hsp101) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04072 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Cba_g20352 HSP93-V, DCA1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20998 HSP93-V, DCA1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g27001 SAG15, CLPD, ERD1 chaperone component *(ClpD) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Ceric.02G041000.1 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Ceric.07G005700.1 CLPB3, CLPB-P,... organellar chaperone *(Clp-p/Clp-m) & original... 0.03 OrthoFinder output from all 47 species
Ceric.18G061200.1 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Cre02.g091400 CLPB4, CLPB-M, HSP98.7 Chaperone protein ClpB4, mitochondrial OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre02.g143307 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g04714 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Dac_g14528 SAG15, CLPD, ERD1 chaperone component *(ClpD) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Dcu_g03157 SAG15, CLPD, ERD1 chaperone component *(ClpD) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Dcu_g08738 HSP93-V, DCA1,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g14360 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Dcu_g20889 CLPB3, CLPB-P, APG6 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25408 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
LOC_Os04g32560.1 HSP93-V, DCA1,... chaperone component ClpC of chloroplast Clp-type protease complex 0.02 OrthoFinder output from all 47 species
LOC_Os12g12850.1 HSP93-V, DCA1,... chaperone component ClpC of chloroplast Clp-type protease complex 0.03 OrthoFinder output from all 47 species
Len_g14887 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Len_g34142 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.02 OrthoFinder output from all 47 species
MA_178786g0010 CLPB3, CLPB-P, APG6 Chaperone protein ClpB2, chloroplastic OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
MA_229920g0010 CLPB3, CLPB-P, APG6 Chaperone protein ClpB2, chloroplastic OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
MA_596288g0010 HSP93-V, DCA1,... Chaperone protein ClpC1, chloroplastic OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Ore_g29985 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Pnu_g10514 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Pnu_g19463 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009790 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.02 OrthoFinder output from all 47 species
Sam_g16602 No alias chaperone component *(ClpC) of chloroplast Clp-type... 0.02 OrthoFinder output from all 47 species
Sam_g19448 No alias organellar chaperone *(Clp-p/Clp-m) & original description: none 0.03 OrthoFinder output from all 47 species
Smo174539 CLPB3, CLPB-P, APG6 External stimuli response.temperature.Hsp... 0.02 OrthoFinder output from all 47 species
Smo439163 HSP93-V, DCA1,... External stimuli response.temperature.Hsp... 0.02 OrthoFinder output from all 47 species
Solyc12g042060.3.1 HSP93-V, DCA1,... chaperone component ClpC of chloroplast Clp-type protease complex 0.04 OrthoFinder output from all 47 species
Spa_g18708 CLPB3, CLPB-P, APG6 organellar chaperone *(Clp-p/Clp-m) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g46302 CLPB3, CLPB-P, APG6 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10070 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Zm00001e008312_P001 HSP93-V, DCA1,... chaperone component ClpC of chloroplast Clp-type protease complex 0.05 OrthoFinder output from all 47 species
Zm00001e040778_P001 HSP93-V, DCA1,... chaperone component ClpC of chloroplast Clp-type protease complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004655 porphobilinogen synthase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 302 431
IPR003959 ATPase_AAA_core 639 814
IPR004176 Clp_R_dom 187 238
IPR004176 Clp_R_dom 111 163
IPR019489 Clp_ATPase_C 820 899
IPR041546 ClpA/ClpB_AAA_lid 440 541
No external refs found!