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  5. Msp_g03516

Msp_g03516


Description : bHLH-type transcription factor & original description: none


Gene families : OG0001148 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Msp_g03516
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AT2G22760 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G22770 NAI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
Aob_g11731 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G102500.1 Ceric.03G102500 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g04159 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g12323 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01036959001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Gb_13728 No alias transcription factor (bHLH). bHLH-IVa-class iron... 0.03 OrthoFinder output from all 47 species
LOC_Os12g43620.1 LOC_Os12g43620 transcription factor (bHLH). bHLH-IVa-class iron... 0.02 OrthoFinder output from all 47 species
Len_g32880 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10698 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g26718 No alias bHLH-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Mp2g02460.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp3g25200.1 No alias transcription factor (bHLH). bHLH-IVa-class iron... 0.01 OrthoFinder output from all 47 species
Mp8g06230.1 BHLH42, TT8 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Ore_g28754 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g12007 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g14377 NAI1 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g35905 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g009640.4.1 Solyc05g009640 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e000935_P001 Zm00001e000935 transcription factor (bHLH). bHLH-IVa-class iron... 0.03 OrthoFinder output from all 47 species
Zm00001e005533_P001 Zm00001e005533 transcription factor (bHLH). bHLH-IVa-class iron... 0.02 OrthoFinder output from all 47 species
Zm00001e012122_P001 Zm00001e012122 transcription factor (bHLH). bHLH-IVa-class iron... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0003993 acid phosphatase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 240 287
No external refs found!