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  5. Tin_g41208

Tin_g41208


Description : component *(NSP1) of NSP1-NSP2 nodulation initiation complex & original description: none


Gene families : OG0006144 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006144_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g41208
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
Adi_g080510 No alias component *(NSP1) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Ala_g25918 No alias component *(NSP1) of NSP1-NSP2 nodulation initiation... 0.04 OrthoFinder output from all 47 species
Aob_g33345 SHR, SGR7 component *(NSP1) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
LOC_Os03g29480.1 LOC_Os03g29480 transcription factor (GRAS). component NSP1 of NSP1-NSP2... 0.03 OrthoFinder output from all 47 species
Pir_g27483 No alias component *(NSP1) of NSP1-NSP2 nodulation initiation... 0.05 OrthoFinder output from all 47 species
Solyc12g049320.3.1 Solyc12g049320 Nodulation-signaling pathway 1 protein OS=Medicago... 0.02 OrthoFinder output from all 47 species
Spa_g42025 No alias component *(NSP1) of NSP1-NSP2 nodulation initiation... 0.03 OrthoFinder output from all 47 species
Zm00001e001953_P001 Zm00001e001953 transcription factor (GRAS). component NSP1 of NSP1-NSP2... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004312 fatty acid synthase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0009922 fatty acid elongase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 231 598
No external refs found!