Tin_g28376 (RSH1, ATRSH1, AT-RSH1)

Aliases : RSH1, ATRSH1, AT-RSH1

Description : ppGpp hydrolase *(RSH1) & original description: none

Gene families : OG0007704 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007704_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g28376
Cluster	HCCA: Cluster_2

Target	Alias	Description	ECC score	Gene Family Method
AT4G02260	RSH1, ATRSH1, AT-RSH1	RELA/SPOT homolog 1	0.04	OrthoFinder output from all 47 species
Adi_g000749	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.08	OrthoFinder output from all 47 species
Als_g01958	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g13069	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g03393	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.08G066100.1	RSH1, ATRSH1,...	ppGpp hydrolase *(RSH1) & original description:...	0.1	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020961.58	RSH1, ATRSH1, AT-RSH1	Putative GTP diphosphokinase RSH1, chloroplastic...	0.02	OrthoFinder output from all 47 species
Dac_g23400	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.07	OrthoFinder output from all 47 species
LOC_Os03g22160.1	RSH1, ATRSH1,...	Putative GTP diphosphokinase RSH1, chloroplastic...	0.02	OrthoFinder output from all 47 species
Len_g17577	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g03474	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.05	OrthoFinder output from all 47 species
MA_10433247g0010	RSH1, ATRSH1, AT-RSH1	Putative GTP diphosphokinase RSH1, chloroplastic...	0.02	OrthoFinder output from all 47 species
Mp6g07090.1	RSH1, ATRSH1, AT-RSH1	Putative GTP diphosphokinase RSH1, chloroplastic...	0.02	OrthoFinder output from all 47 species
Msp_g15202	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g01441	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g03956	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g19490	No alias	ppGpp hydrolase *(RSH1) & original description: none	0.09	OrthoFinder output from all 47 species
Solyc09g075390.4.1	RSH1, ATRSH1,...	Putative GTP diphosphokinase RSH1, chloroplastic...	0.03	OrthoFinder output from all 47 species
Spa_g12236	RSH1, ATRSH1, AT-RSH1	ppGpp hydrolase *(RSH1) & original description: none	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0033865	nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006817	phosphate ion transport	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004095	TGS	542	601
IPR007685	RelA_SpoT	359	478

External Links

No external refs found!

Tin_g28376 (RSH1, ATRSH1, AT-RSH1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation