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  5. Tin_g05489

Tin_g05489


Description : EC_4.1 carbon-carbon lyase & original description: none


Gene families : OG0000356 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g05489
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00164800 evm_27.TU.AmTr_v1... Polyamine metabolism.putrescine.synthesis.cytosolic... 0.03 OrthoFinder output from all 47 species
AMTR_s00011p00266060 SAMDC,... Polyamine... 0.05 OrthoFinder output from all 47 species
AMTR_s00019p00109640 SAMDC,... Polyamine... 0.03 OrthoFinder output from all 47 species
Adi_g056998 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18164 No alias EC_4.1 carbon-carbon lyase & original description: none 0.09 OrthoFinder output from all 47 species
Aop_g62652 No alias EC_4.1 carbon-carbon lyase & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g03355 No alias EC_4.1 carbon-carbon lyase & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g15212 No alias EC_4.1 carbon-carbon lyase & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.07G058600.1 SAMDC, Ceric.07G058600 EC_4.1 carbon-carbon lyase & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.15G068700.1 Ceric.15G068700 EC_4.1 carbon-carbon lyase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.34G041400.1 SAMDC, Ceric.34G041400 EC_4.1 carbon-carbon lyase & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g16388 SAMDC EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22759 No alias EC_4.1 carbon-carbon lyase & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g08190 No alias EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
Gb_37304 No alias ornithine decarboxylase 0.03 OrthoFinder output from all 47 species
Gb_37305 No alias ornithine decarboxylase 0.04 OrthoFinder output from all 47 species
Len_g07243 No alias EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g23603 SAMDC EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
MA_10434945g0020 SAMDC S-adenosyl methionine decarboxylase 0.03 OrthoFinder output from all 47 species
MA_123449g0010 No alias S-adenosyl methionine decarboxylase 0.03 OrthoFinder output from all 47 species
MA_75633g0020 SAMDC S-adenosyl methionine decarboxylase 0.03 OrthoFinder output from all 47 species
Msp_g05404 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g05405 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07578 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17324 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g18524 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g40367 No alias EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g080380.4.1 SAMDC4, BUD2,... S-adenosyl methionine decarboxylase 0.02 OrthoFinder output from all 47 species
Solyc02g089610.2.1 Solyc02g089610 S-adenosyl methionine decarboxylase 0.03 OrthoFinder output from all 47 species
Solyc04g082030.1.1 Solyc04g082030 ornithine decarboxylase 0.02 OrthoFinder output from all 47 species
Solyc05g010420.2.1 Solyc05g010420 S-adenosyl methionine decarboxylase 0.03 OrthoFinder output from all 47 species
Spa_g17277 No alias EC_4.1 carbon-carbon lyase & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g37126 SAMDC EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e035959_P001 Zm00001e035959 ornithine decarboxylase 0.02 OrthoFinder output from all 47 species
Zm00001e041156_P001 Zm00001e041156 S-adenosyl methionine decarboxylase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004014 adenosylmethionine decarboxylase activity IEA Interproscan
BP GO:0006597 spermine biosynthetic process IEA Interproscan
BP GO:0008295 spermidine biosynthetic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001985 S-AdoMet_decarboxylase 2 329
No external refs found!