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  5. Tin_g04575

Tin_g04575 (RPS1, ARRPS1)


Aliases : RPS1, ARRPS1

Description : component *(bS1c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0002574 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002574_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g04575
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00212290 RPS1, ARRPS1,... Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
AT5G30510 RPS1, ARRPS1 ribosomal protein S1 0.08 OrthoFinder output from all 47 species
Adi_g033757 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aev_g03971 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ala_g01963 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Als_g07823 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Als_g32395 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aob_g17787 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aop_g12017 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Aop_g41967 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aspi01Gene13361.t1 RPS1, ARRPS1,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene46819.t1 RPS1, ARRPS1,... component *(bS1c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Azfi_s0030.g024427 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Cba_g16776 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Cba_g16777 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ceric.32G044800.1 RPS1, ARRPS1,... component *(bS1c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.13 RPS1, ARRPS1 Protein biosynthesis.organelle translation... 0.01 OrthoFinder output from all 47 species
Cre09.g394750 RPS1, ARRPS1 Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
Dac_g12960 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Dcu_g08135 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Dde_g07822 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Ehy_g01340 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
GSVIVT01034940001 RPS1, ARRPS1 Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
Gb_02217 RPS1, ARRPS1 component psRPS1 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
LOC_Os03g20100.1 RPS1, ARRPS1,... component psRPS1 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Len_g02246 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Lfl_g03066 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
MA_10425941g0010 RPS1, ARRPS1 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_694512g0010 RPS1, ARRPS1 30S ribosomal protein S1, chloroplastic OS=Spinacia... 0.04 OrthoFinder output from all 47 species
Msp_g11904 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Msp_g22203 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Nbi_g09544 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Ore_g07549 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Pir_g10266 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Pnu_g11886 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Pp3c10_21790V3.1 RPS1, ARRPS1,... ribosomal protein S1 0.01 OrthoFinder output from all 47 species
Ppi_g05695 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017184 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sam_g07761 No alias component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sam_g09837 No alias component *(bS1c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Smo271018 RPS1, ARRPS1 Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
Solyc01g057830.3.1 RPS1, ARRPS1,... component psRPS1 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Spa_g01530 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Spa_g07743 RPS1, ARRPS1 component *(bS1c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Zm00001e038288_P002 RPS1, ARRPS1,... component psRPS1 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003029 S1_domain 92 165
IPR003029 S1_domain 182 245
IPR003029 S1_domain 259 328
No external refs found!