Aliases : ATARFB1B, ARFB1B
Description : ARF-GTPase *(ARFA) & original description: none
Gene families : OG0000301 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000301_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Tin_g03151 | |
Cluster | HCCA: Cluster_181 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00006p00218180 | ARFA1E, ATARFA1E | Vesicle trafficking.Coat protein I (COPI) coatomer... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00048p00155020 | ATARFB1B,... | Vesicle trafficking.Coat protein I (COPI) coatomer... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00096p00110370 | ATARFA1B, ARFA1B | Vesicle trafficking.Coat protein I (COPI) coatomer... | 0.02 | OrthoFinder output from all 47 species | |
AT2G47170 | ARF1A1C | Ras-related small GTP-binding family protein | 0.02 | OrthoFinder output from all 47 species | |
Adi_g009714 | ATARFA1F, ARFA1F | ARF-GTPase *(ARF1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aob_g19871 | ATARFB1B, ARFB1B | ARF-GTPase *(ARFA) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00021127.129 | ARFA1E, ATARFA1E | Vesicle trafficking.Coat protein I (COPI) coatomer... | 0.01 | OrthoFinder output from all 47 species | |
Cre12.g486250 | ARFA1E, ATARFA1E | Vesicle trafficking.Coat protein I (COPI) coatomer... | 0.01 | OrthoFinder output from all 47 species | |
Dac_g04124 | ATARFB1B, ARFB1B | ARF-GTPase *(ARFA) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01032451001 | ATARFA1F, ARFA1F | Vesicle trafficking.Coat protein I (COPI) coatomer... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os01g59790.2 | ATARFA1F,... | ARF-GTPase | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os03g59740.1 | ATARFA1B,... | ARF-GTPase | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g01882 | ATARFB1B, ARFB1B | ARF-GTPase *(ARFA) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pp3c10_20740V3.1 | ARFA1E,... | ADP-ribosylation factor A1E | 0.01 | OrthoFinder output from all 47 species | |
Zm00001e015538_P002 | ATARFB1B,... | ARF-GTPase | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003924 | GTPase activity | IEA | Interproscan |
MF | GO:0005525 | GTP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000123 | histone acetyltransferase complex | IEP | HCCA |
CC | GO:0000124 | SAGA complex | IEP | HCCA |
MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
MF | GO:0003713 | transcription coactivator activity | IEP | HCCA |
CC | GO:0005643 | nuclear pore | IEP | HCCA |
BP | GO:0006405 | RNA export from nucleus | IEP | HCCA |
BP | GO:0006406 | mRNA export from nucleus | IEP | HCCA |
BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
BP | GO:0009891 | positive regulation of biosynthetic process | IEP | HCCA |
BP | GO:0009893 | positive regulation of metabolic process | IEP | HCCA |
BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0015931 | nucleobase-containing compound transport | IEP | HCCA |
CC | GO:0031248 | protein acetyltransferase complex | IEP | HCCA |
BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | HCCA |
BP | GO:0045893 | positive regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0048518 | positive regulation of biological process | IEP | HCCA |
BP | GO:0048522 | positive regulation of cellular process | IEP | HCCA |
BP | GO:0050657 | nucleic acid transport | IEP | HCCA |
BP | GO:0050658 | RNA transport | IEP | HCCA |
BP | GO:0051028 | mRNA transport | IEP | HCCA |
BP | GO:0051168 | nuclear export | IEP | HCCA |
BP | GO:0051169 | nuclear transport | IEP | HCCA |
BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051236 | establishment of RNA localization | IEP | HCCA |
BP | GO:0051254 | positive regulation of RNA metabolic process | IEP | HCCA |
CC | GO:0070461 | SAGA-type complex | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
CC | GO:1902493 | acetyltransferase complex | IEP | HCCA |
BP | GO:1902680 | positive regulation of RNA biosynthetic process | IEP | HCCA |
BP | GO:1903508 | positive regulation of nucleic acid-templated transcription | IEP | HCCA |
CC | GO:1905368 | peptidase complex | IEP | HCCA |
CC | GO:1990234 | transferase complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR006689 | Small_GTPase_ARF/SAR | 6 | 175 |
No external refs found! |