Tin_g01827 (RPT5A, ATS6A.2)

Aliases : RPT5A, ATS6A.2

Description : regulatory component *(RPT5) of 26S proteasome & original description: none

Gene families : OG0003325 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003325_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Tin_g01827

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00104360	RPT5A, ATS6A.2,...	Protein degradation.26S proteasome.regulatory...	0.03	OrthoFinder output from all 47 species
AT3G05530	RPT5A, ATS6A.2	regulatory particle triple-A ATPase 5A	0.03	OrthoFinder output from all 47 species
Adi_g008732	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Aop_g07899	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene28244.t1	RPT5A, ATS6A.2,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0006.g010505	RPT5B	regulatory component *(RPT5) of 26S proteasome &...	0.05	OrthoFinder output from all 47 species
Cba_g08823	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001187.20	RPT5A, ATS6A.2	26S proteasome regulatory subunit 6A homolog OS=Oryza...	0.02	OrthoFinder output from all 47 species
Cre10.g439150	RPT5A, ATS6A.2	Protein degradation.26S proteasome.regulatory...	0.05	OrthoFinder output from all 47 species
Dac_g16496	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.06	OrthoFinder output from all 47 species
Dcu_g01308	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Dde_g12003	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
GSVIVT01017724001	RPT5A, ATS6A.2	Protein degradation.26S proteasome.regulatory...	0.02	OrthoFinder output from all 47 species
Gb_01340	RPT5A, ATS6A.2	regulatory component RPT5 of 26S proteasome	0.06	OrthoFinder output from all 47 species
Gb_25628	RPT5A, ATS6A.2	26S proteasome regulatory subunit 6A homolog OS=Brassica...	0.04	OrthoFinder output from all 47 species
Gb_25630	RPT5A, ATS6A.2	26S proteasome regulatory subunit 6A homolog OS=Solanum...	0.05	OrthoFinder output from all 47 species
LOC_Os02g56000.1	RPT5A, ATS6A.2,...	regulatory component RPT5 of 26S proteasome	0.05	OrthoFinder output from all 47 species
LOC_Os06g07630.1	RPT5A, ATS6A.2,...	regulatory component RPT5 of 26S proteasome	0.04	OrthoFinder output from all 47 species
Lfl_g01430	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Mp3g09490.1	RPT5A, ATS6A.2	regulatory component RPT5 of 26S proteasome	0.04	OrthoFinder output from all 47 species
Ore_g13206	RPT5A, ATS6A.2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c5_21920V3.1	RPT5A, ATS6A.2,...	regulatory particle triple-A ATPase 5A	0.02	OrthoFinder output from all 47 species
Sam_g17237	No alias	regulatory component *(RPT5) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Smo74992	RPT5A, ATS6A.2	Protein degradation.26S proteasome.regulatory...	0.04	OrthoFinder output from all 47 species
Zm00001e016153_P002	RPT5A, ATS6A.2,...	regulatory component RPT5 of 26S proteasome	0.03	OrthoFinder output from all 47 species
Zm00001e031055_P001	RPT5A, ATS6A.2,...	regulatory component RPT5 of 26S proteasome	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004827	proline-tRNA ligase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006099	tricarboxylic acid cycle	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006433	prolyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032501	Prot_ATP_ID_OB_C	75	151
IPR003959	ATPase_AAA_core	209	341
IPR041569	AAA_lid_3	364	408

External Links

No external refs found!

Tin_g01827 (RPT5A, ATS6A.2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation