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  5. Tin_g00912

Tin_g00912 (FPGS1, ATDFB, DFB)


Aliases : FPGS1, ATDFB, DFB

Description : EC_6.3 ligase forming carbon-nitrogen bond & original description: none


Gene families : OG0002558 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002558_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Tin_g00912
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cba_g18338 FPGS2, ATDFC, DFC EC_6.3 ligase forming carbon-nitrogen bond & original... 0.04 OrthoFinder output from all 47 species
Dac_g40925 FPGS1, ATDFB, DFB EC_6.3 ligase forming carbon-nitrogen bond & original... 0.02 OrthoFinder output from all 47 species
Nbi_g11282 FPGS2, ATDFC, DFC EC_6.3 ligase forming carbon-nitrogen bond & original... 0.04 OrthoFinder output from all 47 species
Ore_g02509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g51317 FPGS2, ATDFC, DFC EC_6.3 ligase forming carbon-nitrogen bond & original... 0.03 OrthoFinder output from all 47 species
Spa_g42375 FPGS1, ATDFB, DFB EC_6.3 ligase forming carbon-nitrogen bond & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA

No InterPro domains available for this sequence

No external refs found!