Pir_g54582

Description : not classified & original description: none

Gene families : OG0000027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pir_g54582
Cluster	HCCA: Cluster_225

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00243520	evm_27.TU.AmTr_v1...	Protein degradation.peptidase families.serine-type...	0.03	OrthoFinder output from all 47 species
Adi_g055415	ARA12	protease *(SBT1) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g38722	ARA12	protease *(SBT1) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01019877001	No alias	Protein degradation.peptidase families.serine-type...	0.03	OrthoFinder output from all 47 species
MA_106581g0010	AIR3	protease (SBT5)	0.02	OrthoFinder output from all 47 species
Mp5g07150.1	No alias	protease (SBT1)	0.02	OrthoFinder output from all 47 species
Ore_g18112	ARA12	protease *(SBT1) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g21570	ALE, ALE1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo417799	ATSBT5.4, SBT5.4	Subtilisin-like protease SBT3.3 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008236	serine-type peptidase activity	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017171	serine hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0000976	transcription cis-regulatory region binding	IEP	HCCA
MF	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEP	HCCA
MF	GO:0001067	transcription regulatory region nucleic acid binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0032422	purine-rich negative regulatory element binding	IEP	HCCA
MF	GO:0070001	aspartic-type peptidase activity	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000209	Peptidase_S8/S53_dom	1	129

External Links

No external refs found!