Pir_g19768 (CAB4, LHCA4)


Aliases : CAB4, LHCA4

Description : component *(LHCa4) of LHC-I complex & original description: none


Gene families : OG0000742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000742_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g19768
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00264770 CAB4, LHCA4,... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.11 OrthoFinder output from all 47 species
AMTR_s00013p00180670 LHCA2,... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.1 OrthoFinder output from all 47 species
AMTR_s00131p00114510 evm_27.TU.AmTr_v1... Photosystem I chlorophyll a/b-binding protein 6,... 0.08 OrthoFinder output from all 47 species
AT1G19150 LHCA2*1, LHCA6 photosystem I light harvesting complex gene 6 0.13 OrthoFinder output from all 47 species
AT1G45474 LHCA5 photosystem I light harvesting complex gene 5 0.15 OrthoFinder output from all 47 species
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 0.06 OrthoFinder output from all 47 species
AT3G61470 LHCA2 photosystem I light harvesting complex gene 2 0.07 OrthoFinder output from all 47 species
Adi_g001938 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Adi_g113731 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Aev_g04468 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g05867 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g13249 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g00950 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.07 OrthoFinder output from all 47 species
Ala_g00983 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Ala_g21633 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Als_g05433 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Als_g07082 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.09 OrthoFinder output from all 47 species
Als_g39064 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02952 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g08832 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g10644 LHCA2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11303 LHCA2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13294 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17482 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g33642 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.02 OrthoFinder output from all 47 species
Aop_g01073 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g08471 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.05 OrthoFinder output from all 47 species
Aop_g12147 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.14 OrthoFinder output from all 47 species
Aop_g13138 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Aop_g36261 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Aspi01Gene25390.t1 LHCA5, Aspi01Gene25390 linker protein *(LHCa5) between PS-I complex and NDH... 0.09 OrthoFinder output from all 47 species
Aspi01Gene61720.t1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene65950.t1 LHCA2, Aspi01Gene65950 component *(LHCa2) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0013.g013231 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original... 0.06 OrthoFinder output from all 47 species
Azfi_s0551.g076608 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.11 OrthoFinder output from all 47 species
Cba_g01741 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.05 OrthoFinder output from all 47 species
Cba_g06305 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.13 OrthoFinder output from all 47 species
Cba_g15852 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.09 OrthoFinder output from all 47 species
Cba_g21696 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g36933 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Ceric.21G064400.1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original... 0.15 OrthoFinder output from all 47 species
Ceric.22G073900.1 LHCA2, Ceric.22G073900 component *(LHCa2) of LHC-I complex & original... 0.13 OrthoFinder output from all 47 species
Ceric.28G031700.1 LHCA2, Ceric.28G031700 component *(LHCa2) of LHC-I complex & original... 0.15 OrthoFinder output from all 47 species
Ceric.33G037200.1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original... 0.09 OrthoFinder output from all 47 species
Ceric.33G046000.1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original... 0.15 OrthoFinder output from all 47 species
Ceric.37G034400.1 LHCA5, Ceric.37G034400 linker protein *(LHCa5) between PS-I complex and NDH... 0.07 OrthoFinder output from all 47 species
Cre06.g272650 LHCA5 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 OrthoFinder output from all 47 species
Cre06.g278213 CAB4, LHCA4 Chlorophyll a-b binding protein P4, chloroplastic... 0.07 OrthoFinder output from all 47 species
Cre10.g425900 CAB4, LHCA4 Chlorophyll a-b binding protein 4, chloroplastic... 0.07 OrthoFinder output from all 47 species
Cre10.g452050 CAB4, LHCA4 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 OrthoFinder output from all 47 species
Cre16.g687900 LHCA5 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.07 OrthoFinder output from all 47 species
Dac_g04068 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Dac_g04958 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g13497 LHCA2 component *(LHCa4) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Dac_g21646 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.03 OrthoFinder output from all 47 species
Dcu_g02371 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Dcu_g03606 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g09352 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.08 OrthoFinder output from all 47 species
Dcu_g29671 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g34548 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g45197 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.13 OrthoFinder output from all 47 species
Dde_g02029 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Dde_g08226 LHCA5 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g16731 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Ehy_g20973 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007988001 CAB4, LHCA4 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.09 OrthoFinder output from all 47 species
GSVIVT01009498001 LHCA5 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.11 OrthoFinder output from all 47 species
GSVIVT01010483001 LHCA2 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.15 OrthoFinder output from all 47 species
GSVIVT01015045001 LHCA2*1, LHCA6 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.1 OrthoFinder output from all 47 species
Gb_08408 CAB4, LHCA4 component LHCa4 of LHC-I complex 0.05 OrthoFinder output from all 47 species
Gb_25594 LHCA5 Photosystem I chlorophyll a/b-binding protein 5,... 0.04 OrthoFinder output from all 47 species
Gb_32082 LHCA2 component LHCa2 of LHC-I complex 0.07 OrthoFinder output from all 47 species
LOC_Os02g52650.1 LHCA5, LOC_Os02g52650 component LHCa5 of LHC-I complex 0.11 OrthoFinder output from all 47 species
LOC_Os07g38960.1 LHCA2, LOC_Os07g38960 component LHCa2 of LHC-I complex 0.12 OrthoFinder output from all 47 species
LOC_Os08g33820.1 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.09 OrthoFinder output from all 47 species
LOC_Os09g26810.1 LOC_Os09g26810 component LHCa6 of LHC-I complex 0.07 OrthoFinder output from all 47 species
Len_g05165 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Len_g09864 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Len_g12015 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Len_g17260 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.13 OrthoFinder output from all 47 species
Lfl_g00790 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g34099 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.04 OrthoFinder output from all 47 species
MA_65346g0010 CAB4, LHCA4 Chlorophyll a-b binding protein P4, chloroplastic... 0.08 OrthoFinder output from all 47 species
Mp3g07840.1 CAB4, LHCA4 component LHCa4 of LHC-I complex 0.14 OrthoFinder output from all 47 species
Mp8g13180.1 LHCA2 component LHCa2 of LHC-I complex 0.15 OrthoFinder output from all 47 species
Msp_g01556 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g04666 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Msp_g12268 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00555 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Nbi_g00735 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.09 OrthoFinder output from all 47 species
Nbi_g05658 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g11030 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07782 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g07783 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43266 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g43267 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06900 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.03 OrthoFinder output from all 47 species
Pnu_g08290 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Pp3c20_23240V3.1 LHCA2, Pp3c20_23240 photosystem I light harvesting complex gene 2 0.03 OrthoFinder output from all 47 species
Pp3c4_11854V3.1 LHCA5, Pp3c4_11854 photosystem I light harvesting complex gene 5 0.03 OrthoFinder output from all 47 species
Ppi_g12016 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g12622 LHCA2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18284 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g016013 LHCA2 component *(LHCa2) of LHC-I complex & original... 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017225 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original... 0.08 OrthoFinder output from all 47 species
Sam_g10927 No alias component *(LHCa4) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g16961 No alias component *(LHCa4) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g40409 No alias component *(LHCa2) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Smo270427 CAB4, LHCA4 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 OrthoFinder output from all 47 species
Smo403333 LHCA5 Photosystem I chlorophyll a/b-binding protein 5,... 0.05 OrthoFinder output from all 47 species
Smo446130 LHCA2 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 OrthoFinder output from all 47 species
Solyc03g115900.4.1 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.05 OrthoFinder output from all 47 species
Solyc06g069730.3.1 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.06 OrthoFinder output from all 47 species
Solyc07g022900.4.1 LHCA5, Solyc07g022900 component LHCa5 of LHC-I complex 0.14 OrthoFinder output from all 47 species
Solyc10g006230.3.1 LHCA2, Solyc10g006230 component LHCa2 of LHC-I complex 0.06 OrthoFinder output from all 47 species
Solyc12g009200.2.1 LHCA2*1, LHCA6,... component LHCa6 of LHC-I complex 0.07 OrthoFinder output from all 47 species
Spa_g04945 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Spa_g04946 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Spa_g08046 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.09 OrthoFinder output from all 47 species
Spa_g16233 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29531 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g04383 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Tin_g10537 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Zm00001e004129_P001 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.12 OrthoFinder output from all 47 species
Zm00001e009885_P001 LHCA2*1, LHCA6,... component LHCa6 of LHC-I complex 0.05 OrthoFinder output from all 47 species
Zm00001e015945_P001 LHCA5, Zm00001e015945 component LHCa5 of LHC-I complex 0.09 OrthoFinder output from all 47 species
Zm00001e022453_P001 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.1 OrthoFinder output from all 47 species
Zm00001e035349_P002 LHCA2, Zm00001e035349 component LHCa2 of LHC-I complex 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 62 221
No external refs found!