Description : not classified & original description: none
Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00131p00098210 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g13040,... | 0.02 | OrthoFinder output from all 47 species | |
AT1G02420 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
AT3G60050 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
AT5G14820 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g01694 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01012782001 | No alias | Pentatricopeptide repeat-containing protein At3g61360... | 0.02 | OrthoFinder output from all 47 species | |
MA_355286g0010 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.01 | OrthoFinder output from all 47 species | |
MA_455059g0020 | No alias | Pentatricopeptide repeat-containing protein At3g62470,... | 0.01 | OrthoFinder output from all 47 species | |
Solyc03g112560.4.1 | Solyc03g112560 | Pentatricopeptide repeat-containing protein At1g80550,... | 0.02 | OrthoFinder output from all 47 species | |
Tin_g09961 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e031478_P001 | Zm00001e031478 | Pentatricopeptide repeat-containing protein At3g62470,... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e036197_P001 | Zm00001e036197 | Pentatricopeptide repeat-containing protein At1g71060,... | 0.01 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003729 | mRNA binding | IEP | HCCA |
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0004252 | serine-type endopeptidase activity | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005750 | mitochondrial respiratory chain complex III | IEP | HCCA |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | HCCA |
BP | GO:0006122 | mitochondrial electron transport, ubiquinol to cytochrome c | IEP | HCCA |
BP | GO:0006354 | DNA-templated transcription elongation | IEP | HCCA |
BP | GO:0006368 | transcription elongation by RNA polymerase II | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006413 | translational initiation | IEP | HCCA |
BP | GO:0006465 | signal peptide processing | IEP | HCCA |
CC | GO:0008023 | transcription elongation factor complex | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0009060 | aerobic respiration | IEP | HCCA |
BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
BP | GO:0015980 | energy derivation by oxidation of organic compounds | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
BP | GO:0016485 | protein processing | IEP | HCCA |
BP | GO:0016570 | histone modification | IEP | HCCA |
CC | GO:0016593 | Cdc73/Paf1 complex | IEP | HCCA |
BP | GO:0019646 | aerobic electron transport chain | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
BP | GO:0022900 | electron transport chain | IEP | HCCA |
BP | GO:0022904 | respiratory electron transport chain | IEP | HCCA |
BP | GO:0031047 | RNA-mediated gene silencing | IEP | HCCA |
MF | GO:0031369 | translation initiation factor binding | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
CC | GO:0035145 | exon-exon junction complex | IEP | HCCA |
BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
BP | GO:0043248 | proteasome assembly | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
CC | GO:0045275 | respiratory chain complex III | IEP | HCCA |
BP | GO:0045333 | cellular respiration | IEP | HCCA |
BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
BP | GO:0051604 | protein maturation | IEP | HCCA |
BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
CC | GO:0070069 | cytochrome complex | IEP | HCCA |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
CC | GO:0098798 | mitochondrial protein-containing complex | IEP | HCCA |
CC | GO:0098800 | inner mitochondrial membrane protein complex | IEP | HCCA |
CC | GO:0098803 | respiratory chain complex | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
CC | GO:1902495 | transmembrane transporter complex | IEP | HCCA |
CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
CC | GO:1990351 | transporter complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 430 | 478 |
IPR002885 | Pentatricopeptide_repeat | 570 | 619 |
IPR002885 | Pentatricopeptide_repeat | 293 | 339 |
IPR002885 | Pentatricopeptide_repeat | 189 | 217 |
IPR002885 | Pentatricopeptide_repeat | 504 | 533 |
IPR002885 | Pentatricopeptide_repeat | 400 | 427 |
IPR002885 | Pentatricopeptide_repeat | 539 | 568 |
IPR002885 | Pentatricopeptide_repeat | 644 | 673 |
IPR002885 | Pentatricopeptide_repeat | 258 | 287 |
IPR002885 | Pentatricopeptide_repeat | 157 | 182 |
IPR002885 | Pentatricopeptide_repeat | 356 | 387 |
No external refs found! |