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  5. Pir_g16059

Pir_g16059 (DCL4, ATDCL4)


Aliases : DCL4, ATDCL4

Description : endoribonuclease (DCL4) of transacting siRNA pathway & original description: none


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g16059

Target Alias Description ECC score Gene Family Method Actions
Aev_g37944 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Azfi_s0014.g013625 DCL4, ATDCL4 not classified & original description: CDS=9-5069 0.03 OrthoFinder output from all 47 species
Ceric.1Z315900.1 DCL4, ATDCL4,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.01 OrthoFinder output from all 47 species
LOC_Os01g68120.1 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.02 OrthoFinder output from all 47 species
Mp1g02840.1 DCL1, CAF,... endoribonuclease (DCL3). endoribonuclease (DCL4) 0.01 OrthoFinder output from all 47 species
Msp_g44227 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Ppi_g29457 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Tin_g29214 DCL4, ATDCL4 endoribonuclease (DCL4) of transacTing siRNA pathway &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 371 486
IPR000999 RNase_III_dom 1226 1337
IPR000999 RNase_III_dom 1021 1150
IPR003100 PAZ_dom 845 978
IPR006935 Helicase/UvrB_N 27 186
No external refs found!