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  5. Pir_g12588

Pir_g12588


Description : not classified & original description: none


Gene families : OG0013231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0013231_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g12588

Target Alias Description ECC score Gene Family Method Actions
Lfl_g07444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44434 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 531 577
IPR002885 Pentatricopeptide_repeat 331 379
IPR002885 Pentatricopeptide_repeat 204 226
IPR002885 Pentatricopeptide_repeat 505 527
IPR002885 Pentatricopeptide_repeat 233 258
IPR002885 Pentatricopeptide_repeat 406 432
IPR002885 Pentatricopeptide_repeat 634 664
IPR002885 Pentatricopeptide_repeat 606 628
IPR002885 Pentatricopeptide_repeat 131 153
IPR002885 Pentatricopeptide_repeat 721 743
IPR002885 Pentatricopeptide_repeat 852 872
IPR002885 Pentatricopeptide_repeat 750 793
No external refs found!