Aliases : RPOA
Description : core component *(RpoA) of plastid-encoded RNA polymerase & original description: none
Gene families : OG0006820 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006820_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Pir_g12462 | |
Cluster | HCCA: Cluster_8 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
ATCG00740 | RPOA | RNA polymerase subunit alpha | 0.17 | OrthoFinder output from all 47 species | |
Aev_g02093 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.24 | OrthoFinder output from all 47 species | |
Als_g16097 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.11 | OrthoFinder output from all 47 species | |
Aob_g19924 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.07 | OrthoFinder output from all 47 species | |
Cba_g60899 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.08 | OrthoFinder output from all 47 species | |
Ceric.05G041900.1 | RPOA, Ceric.05G041900 | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.22 | OrthoFinder output from all 47 species | |
Ceric.1Z019700.1 | RPOA, Ceric.1Z019700 | not classified & original description: pacid=50586392... | 0.19 | OrthoFinder output from all 47 species | |
Ceric.38G008600.1 | RPOA, Ceric.38G008600 | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.22 | OrthoFinder output from all 47 species | |
Dcu_g20888 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.06 | OrthoFinder output from all 47 species | |
GSVIVT01024860001 | RPOA | DNA-directed RNA polymerase subunit alpha OS=Vitis vinifera | 0.07 | OrthoFinder output from all 47 species | |
Gb_17282 | RPOA | DNA-directed RNA polymerase subunit alpha OS=Cycas... | 0.05 | OrthoFinder output from all 47 species | |
Gb_25929 | RPOA | DNA-directed RNA polymerase subunit alpha OS=Cycas... | 0.04 | OrthoFinder output from all 47 species | |
Gb_36750 | RPOA | RpoA core component plastid-encoded RNA polymerase | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os04g16842.1 | RPOA, LOC_Os04g16842 | RpoA core component plastid-encoded RNA polymerase | 0.22 | OrthoFinder output from all 47 species | |
LOC_Os06g39700.1 | RPOA, LOC_Os06g39700 | RpoA core component plastid-encoded RNA polymerase | 0.24 | OrthoFinder output from all 47 species | |
LOC_Os09g07910.1 | RPOA, LOC_Os09g07910 | DNA-directed RNA polymerase subunit alpha OS=Oryza... | 0.12 | OrthoFinder output from all 47 species | |
Lfl_g19118 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.23 | OrthoFinder output from all 47 species | |
Mpzg00720.1 | RPOA | RpoA core component plastid-encoded RNA polymerase | 0.06 | OrthoFinder output from all 47 species | |
Nbi_g19365 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.13 | OrthoFinder output from all 47 species | |
Sam_g01699 | No alias | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.16 | OrthoFinder output from all 47 species | |
Solyc00g500029.1.1 | RPOA, Solyc00g500029 | DNA-directed RNA polymerase subunit alpha OS=Solanum... | 0.05 | OrthoFinder output from all 47 species | |
Solyc00g500074.1.1 | RPOA, Solyc00g500074 | DNA-directed RNA polymerase subunit alpha OS=Solanum... | 0.05 | OrthoFinder output from all 47 species | |
Solyc00g500157.1.1 | RPOA, Solyc00g500157 | RpoA core component plastid-encoded RNA polymerase | 0.14 | OrthoFinder output from all 47 species | |
Solyc01g017440.1.1 | RPOA, Solyc01g017440 | DNA-directed RNA polymerase subunit alpha OS=Solanum... | 0.19 | OrthoFinder output from all 47 species | |
Solyc12g035890.3.1 | RPOA, Solyc12g035890 | DNA-directed RNA polymerase subunit alpha OS=Solanum... | 0.02 | OrthoFinder output from all 47 species | |
Spa_g18101 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.12 | OrthoFinder output from all 47 species | |
Tin_g20913 | RPOA | core component *(RpoA) of plastid-encoded RNA polymerase... | 0.11 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | DNA-templated transcription | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0003954 | NADH dehydrogenase activity | IEP | HCCA |
MF | GO:0003955 | NAD(P)H dehydrogenase (quinone) activity | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005840 | ribosome | IEP | HCCA |
BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
BP | GO:0006754 | ATP biosynthetic process | IEP | HCCA |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | HCCA |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | HCCA |
MF | GO:0008137 | NADH dehydrogenase (ubiquinone) activity | IEP | HCCA |
BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
MF | GO:0015453 | oxidoreduction-driven active transmembrane transporter activity | IEP | HCCA |
BP | GO:0015979 | photosynthesis | IEP | HCCA |
BP | GO:0015986 | proton motive force-driven ATP synthesis | IEP | HCCA |
BP | GO:0015994 | chlorophyll metabolic process | IEP | HCCA |
BP | GO:0015995 | chlorophyll biosynthetic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | HCCA |
MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
CC | GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | IEP | HCCA |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0042440 | pigment metabolic process | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
CC | GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o) | IEP | HCCA |
BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
BP | GO:0046148 | pigment biosynthetic process | IEP | HCCA |
BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
MF | GO:0050136 | NADH dehydrogenase (quinone) activity | IEP | HCCA |
BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
No external refs found! |