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  5. Pir_g11761

Pir_g11761 (PAT1)


Aliases : PAT1

Description : GRAS-type transcription factor & original description: none


Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g11761
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Ala_g02325 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g03969 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14420 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50028 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0084.g039020 PAT1 GRAS-type transcription factor & original description: CDS=1-2502 0.03 OrthoFinder output from all 47 species
Cba_g59690 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.39G021800.1 PAT1, Ceric.39G021800 GRAS-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g06827 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g13669 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g01511 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01010007001 SCL1 RNA biosynthesis.transcriptional activation.GRAS... 0.03 OrthoFinder output from all 47 species
LOC_Os07g36170.2 PAT1, LOC_Os07g36170 transcription factor (GRAS) 0.02 OrthoFinder output from all 47 species
LOC_Os07g39470.1 PAT1, LOC_Os07g39470 transcription factor (GRAS) 0.03 OrthoFinder output from all 47 species
Len_g14339 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28608 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19162 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20339 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10472 PAT1 GRAS-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16499 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04572 PAT1 GRAS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g46955 PAT1 GRAS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e031707_P001 SCL1, Zm00001e031707 transcription factor (GRAS) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 295 661
No external refs found!