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  5. Pir_g11692

Pir_g11692


Description : assembly factor involved in RuBisCo assembly *(RAF1) & original description: none


Gene families : OG0006523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pir_g11692
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00163120 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Aev_g05322 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
Aop_g09390 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene33663.t1 Aspi01Gene33663 assembly factor involved in RuBisCo assembly *(RAF1) &... 0.04 OrthoFinder output from all 47 species
Cba_g07506 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
Ceric.03G026300.1 Ceric.03G026300 assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species
Dac_g13000 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.05 OrthoFinder output from all 47 species
Smo441634 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Solyc11g006060.2.1 Solyc11g006060 RAF1 assembly factor involved in RuBisCo assembly 0.03 OrthoFinder output from all 47 species
Spa_g04323 No alias assembly factor involved in RuBisCo assembly *(RAF1) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
InterPro domains Description Start Stop
IPR041358 Raf1_N 190 294
IPR040781 Raf1_HTH 119 178
IPR040858 Raf1_C 314 459
No external refs found!