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Aliases : SNL4
Description : component *(SNL) of histone deacetylase machineries & original description: none
Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G24190 | SNL3, ATSIN3, SIN3 | SIN3-like 3 | 0.03 | OrthoFinder output from all 47 species | |
| AT1G70060 | SNL4 | SIN3-like 4 | 0.02 | OrthoFinder output from all 47 species | |
| AT3G01320 | SNL1 | SIN3-like 1 | 0.02 | OrthoFinder output from all 47 species | |
| AT5G15020 | SNL2 | SIN3-like 2 | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g057345 | SNL2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g088432 | SNL3, ATSIN3, SIN3 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g117146 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g17667 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g21578 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g27014 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g29157 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0048.g030537 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.02G103800.1 | SNL4, Ceric.02G103800 | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.31G072300.1 | SNL4, Ceric.31G072300 | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001155.28 | SNL3, ATSIN3, SIN3 | Paired amphipathic helix protein Sin3-like 1... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00021234.23 | SNL5 | Paired amphipathic helix protein Sin3-like 3... | 0.03 | OrthoFinder output from all 47 species | |
| Cre03.g180800 | SNL4 | Paired amphipathic helix protein Sin3-like 4... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g18720 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01020136001 | SNL3, ATSIN3, SIN3 | Chromatin organisation.histone modifications.histone... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01032579001 | SNL2 | Chromatin organisation.histone modifications.histone... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_35988 | SNL4 | component SNL of histone deacetylase machineries | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g01960.1 | SNL3, ATSIN3,... | component SNL of histone deacetylase machineries | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g03500 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g03517 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.07 | OrthoFinder output from all 47 species | |
| MA_18241g0010 | SNL4 | component SNL of histone deacetylase machineries | 0.04 | OrthoFinder output from all 47 species | |
| Mp3g02880.1 | SNL4 | component SNL of histone deacetylase machineries | 0.03 | OrthoFinder output from all 47 species | |
| Mp7g11300.1 | SNL5 | Paired amphipathic helix protein Sin3-like 2... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g06593 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g24890 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g03860 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g30140 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g18041 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g09115 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0277.g027077 | SNL3, ATSIN3, SIN3 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g14557 | No alias | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g25571 | No alias | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Smo440352 | SNL4 | Chromatin organisation.histone modifications.histone... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g067570.3.1 | SNL2, Solyc02g067570 | component SNL of histone deacetylase machineries | 0.07 | OrthoFinder output from all 47 species | |
| Solyc02g087360.4.1 | SNL2, Solyc02g087360 | component SNL of histone deacetylase machineries | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g18268 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.07 | OrthoFinder output from all 47 species | |
| Tin_g13041 | SNL4 | component *(SNL) of histone deacetylase machineries &... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e017111_P002 | SNL4, Zm00001e017111 | component SNL of histone deacetylase machineries | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e025644_P001 | SNL4, Zm00001e025644 | component SNL of histone deacetylase machineries | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
| MF | GO:0004176 | ATP-dependent peptidase activity | IEP | HCCA |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
| BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
| BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | HCCA |
| MF | GO:0061666 | UFM1 ligase activity | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| MF | GO:0071568 | UFM1 transferase activity | IEP | HCCA |
| BP | GO:0071569 | protein ufmylation | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |