Aliases : emb1138
Description : not classified & original description: none
Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Len_g56603 | |
Cluster | HCCA: Cluster_43 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00003p00168720 | emb1138,... | RNA processing.organelle machineries.RNA... | 0.03 | OrthoFinder output from all 47 species | |
AT5G26742 | emb1138 | DEAD box RNA helicase (RH3) | 0.06 | OrthoFinder output from all 47 species | |
Adi_g023797 | PMH1, ATRH9 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Adi_g079817 | emb1138 | group-II intron splicing RNA helicase *(RH3) & original... | 0.04 | OrthoFinder output from all 47 species | |
Ala_g22353 | emb1138 | group-II intron splicing RNA helicase *(RH3) & original... | 0.05 | OrthoFinder output from all 47 species | |
Als_g07437 | emb1138 | group-II intron splicing RNA helicase *(RH3) & original... | 0.07 | OrthoFinder output from all 47 species | |
Als_g26679 | emb1138 | group-II intron splicing RNA helicase *(RH3) & original... | 0.04 | OrthoFinder output from all 47 species | |
Aob_g15554 | emb1138 | group-II intron splicing RNA helicase *(RH3) & original... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g04482 | emb1138 | group-II intron splicing RNA helicase *(RH3) & original... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0166.g054407 | emb1138 | group-II intron splicing RNA helicase *(RH3) & original... | 0.06 | OrthoFinder output from all 47 species | |
Cba_g07520 | emb1138 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g11616 | emb1138 | group-II intron splicing RNA helicase *(RH3) & original... | 0.07 | OrthoFinder output from all 47 species | |
Dcu_g39360 | emb1138 | group-II intron splicing RNA helicase *(RH3) & original... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g04423 | emb1138 | group-II intron splicing RNA helicase *(RH3) & original... | 0.06 | OrthoFinder output from all 47 species | |
Gb_04849 | emb1138 | RH3 plastidial RNA basal splicing factor | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os03g61220.1 | emb1138, LOC_Os03g61220 | RH3 plastidial RNA basal splicing factor | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g10151 | emb1138 | group-II intron splicing RNA helicase *(RH3) & original... | 0.04 | OrthoFinder output from all 47 species | |
MA_10206082g0010 | PMH2, ATRH53 | RNA helicase (PMH) | 0.02 | OrthoFinder output from all 47 species | |
Mp3g17170.1 | emb1138 | RH3 plastidial RNA basal splicing factor. RNA helicase (PMH) | 0.02 | OrthoFinder output from all 47 species | |
Msp_g07724 | emb1138 | group-II intron splicing RNA helicase *(RH3) & original... | 0.07 | OrthoFinder output from all 47 species | |
Nbi_g06285 | emb1138 | group-II intron splicing RNA helicase *(RH3) & original... | 0.04 | OrthoFinder output from all 47 species | |
Ore_g29256 | emb1138 | group-II intron splicing RNA helicase *(RH3) & original... | 0.06 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0064.g015897 | emb1138 | group-II intron splicing RNA helicase *(RH3) & original... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0230.g026421 | emb1138 | group-II intron splicing RNA helicase *(RH3) & original... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g09733 | No alias | group-II intron splicing RNA helicase *(RH3) & original... | 0.04 | OrthoFinder output from all 47 species | |
Solyc08g042050.3.1 | emb1138, Solyc08g042050 | RH3 plastidial RNA basal splicing factor | 0.03 | OrthoFinder output from all 47 species | |
Solyc12g006320.3.1 | PMH2, ATRH53,... | RNA helicase (PMH) | 0.02 | OrthoFinder output from all 47 species | |
Spa_g17328 | emb1138 | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e006243_P001 | emb1138, Zm00001e006243 | RH3 plastidial RNA basal splicing factor | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e011716_P001 | emb1138, Zm00001e011716 | RH3 plastidial RNA basal splicing factor | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
MF | GO:0004813 | alanine-tRNA ligase activity | IEP | HCCA |
MF | GO:0005509 | calcium ion binding | IEP | HCCA |
BP | GO:0006082 | organic acid metabolic process | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
BP | GO:0006419 | alanyl-tRNA aminoacylation | IEP | HCCA |
BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
BP | GO:0006629 | lipid metabolic process | IEP | HCCA |
BP | GO:0006720 | isoprenoid metabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
BP | GO:0008299 | isoprenoid biosynthetic process | IEP | HCCA |
BP | GO:0008610 | lipid biosynthetic process | IEP | HCCA |
CC | GO:0009521 | photosystem | IEP | HCCA |
CC | GO:0009523 | photosystem II | IEP | HCCA |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0015979 | photosynthesis | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | HCCA |
CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0043038 | amino acid activation | IEP | HCCA |
BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043436 | oxoacid metabolic process | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044255 | cellular lipid metabolic process | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HelpHCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
CC | GO:0098796 | membrane protein complex | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
CC | GO:1902494 | catalytic complex | IEP | HCCA |
CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR011545 | DEAD/DEAH_box_helicase_dom | 165 | 336 |
No external refs found! |