Len_g50097

Description : not classified & original description: none

Gene families : OG0005577 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005577_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g50097
Cluster	HCCA: Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
AT1G73110	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	OrthoFinder output from all 47 species
Aev_g06596	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Ala_g06168	No alias	not classified & original description: none	0.09	OrthoFinder output from all 47 species
Aob_g09667	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g14641	No alias	not classified & original description: none	0.12	OrthoFinder output from all 47 species
Aspi01Gene72562.t1	Aspi01Gene72562	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0587.g078545	No alias	not classified & original description: CDS=85-1572	0.04	OrthoFinder output from all 47 species
Cba_g13522	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.08G032500.1	Ceric.08G032500	not classified & original description: pacid=50638582...	0.08	OrthoFinder output from all 47 species
Dac_g14854	No alias	not classified & original description: none	0.13	OrthoFinder output from all 47 species
Dcu_g24022	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g18676	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01016062001	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.13	OrthoFinder output from all 47 species
Gb_29248	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.04	OrthoFinder output from all 47 species
LOC_Os04g56320.1	LOC_Os04g56320	Ribulose bisphosphate carboxylase/oxygenase activase 2,...	0.06	OrthoFinder output from all 47 species
Lfl_g04649	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_10428784g0010	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.05	OrthoFinder output from all 47 species
MA_379291g0010	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Mp2g04090.1	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.03	OrthoFinder output from all 47 species
Msp_g02450	No alias	not classified & original description: none	0.21	OrthoFinder output from all 47 species
Nbi_g06629	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g19785	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g07975	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g58392	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g45761	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020487	No alias	not classified & original description: CDS=305-1777	0.04	OrthoFinder output from all 47 species
Sam_g29423	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Sam_g49192	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Smo82367	No alias	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.11	OrthoFinder output from all 47 species
Solyc03g117850.4.1	Solyc03g117850	Ribulose bisphosphate carboxylase/oxygenase activase,...	0.13	OrthoFinder output from all 47 species
Tin_g21285	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
MF	GO:0009916	alternative oxidase activity	IEP	HCCA
MF	GO:0015930	glutamate synthase activity	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	HCCA
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	HCCA
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
CC	GO:0034357	photosynthetic membrane	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0042651	thylakoid membrane	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	272	414

External Links

No external refs found!

Len_g50097

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation