Len_g44856 (EMB2758)


Aliases : EMB2758

Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g44856

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00107400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
AT3G15130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004402 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g005787 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005799 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018966 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g021679 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022355 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g034312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069035 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g087234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g089097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099276 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g104966 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g09730 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g32785 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g06600 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g14569 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g20209 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g20488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05739 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07425 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g09502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19077 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19219 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30540 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30718 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g27296 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02659 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16640 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17427 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17754 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20313 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g43404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g60650 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07235.t1 REME1, Aspi01Gene07235 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14074.t1 CRR22, Aspi01Gene14074 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene27806.t1 CRR2, Aspi01Gene27806 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0136.g050953 No alias not classified & original description: CDS=1-2220 0.04 OrthoFinder output from all 47 species
Azfi_s0251.g060294 No alias not classified & original description: CDS=1-879 0.03 OrthoFinder output from all 47 species
Azfi_s0544.g076391 No alias not classified & original description: CDS=1-906 0.04 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.03 OrthoFinder output from all 47 species
Cba_g03367 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g04727 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05567 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06745 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g14728 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g17429 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20876 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29672 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g44411 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45827 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g45986 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g46044 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67460 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g77212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G043000.1 Ceric.03G043000 not classified & original description: pacid=50572819... 0.03 OrthoFinder output from all 47 species
Ceric.11G086200.1 OTP84, Ceric.11G086200 not classified & original description: pacid=50595902... 0.03 OrthoFinder output from all 47 species
Ceric.1Z148300.1 Ceric.1Z148300 not classified & original description: pacid=50637132... 0.03 OrthoFinder output from all 47 species
Ceric.21G004000.1 Ceric.21G004000 not classified & original description: pacid=50604228... 0.06 OrthoFinder output from all 47 species
Ceric.22G079200.1 OTP84, Ceric.22G079200 not classified & original description: pacid=50615391... 0.03 OrthoFinder output from all 47 species
Ceric.28G068300.1 DOT4, Ceric.28G068300 not classified & original description: pacid=50570176... 0.04 OrthoFinder output from all 47 species
Ceric.34G039200.1 Ceric.34G039200 not classified & original description: pacid=50623691... 0.04 OrthoFinder output from all 47 species
Ceric.38G015500.1 Ceric.38G015500 not classified & original description: pacid=50579581... 0.03 OrthoFinder output from all 47 species
Ceric.38G024200.1 Ceric.38G024200 not classified & original description: pacid=50580039... 0.03 OrthoFinder output from all 47 species
Dac_g05642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g24393 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g25885 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30276 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g35075 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g45763 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g46026 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g12346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14626 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g16922 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36025 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36401 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45110 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47766 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g50144 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16795 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g26569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g38000 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g46461 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g19916 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035491001 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
GSVIVT01037258001 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.04 OrthoFinder output from all 47 species
Len_g02415 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17972 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18501 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18985 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g33724 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g37832 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g43892 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g59693 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06276 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g04332 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17708 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g18730 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g22760 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g30310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31910 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41385 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g44335 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g47992 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g07147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20412 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09916 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g13275 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33886 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63642 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03469 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g03470 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g19866 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g23094 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23611 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03881 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05927 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10348 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14956 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15182 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18663 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g42008 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g48450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53018 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53207 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53363 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56584 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006530 No alias not classified & original description: CDS=1-570 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0189.g025174 No alias not classified & original description: CDS=1-1665 0.04 OrthoFinder output from all 47 species
Sam_g08388 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g22788 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24307 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15290 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22195 OTP82 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g55588 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g56476 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05882 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06121 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14539 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g30396 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g32370 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g35497 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g46355 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 466 514
IPR002885 Pentatricopeptide_repeat 364 411
IPR002885 Pentatricopeptide_repeat 262 310
IPR002885 Pentatricopeptide_repeat 60 107
IPR002885 Pentatricopeptide_repeat 164 210
IPR002885 Pentatricopeptide_repeat 35 57
No external refs found!