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  5. Len_g23680

Len_g23680 (TAF15b)


Aliases : TAF15b

Description : not classified & original description: none


Gene families : OG0003283 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003283_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g23680

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00153p00073330 TAF15b,... Transcription initiation factor TFIID subunit 15b... 0.03 OrthoFinder output from all 47 species
Adi_g079485 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07541 TAF15b not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.19G014000.1 TAF15b, Ceric.19G014000 not classified & original description: pacid=50575256... 0.05 OrthoFinder output from all 47 species
Dde_g07003 TAF15b not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14874 TAF15b not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g06028 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11892 TAF15b not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013936 TAF15b not classified & original description: CDS=120-1466 0.03 OrthoFinder output from all 47 species
Solyc06g082220.4.1 TAF15b, Solyc06g082220 Transcription initiation factor TFIID subunit 15b... 0.03 OrthoFinder output from all 47 species
Spa_g22431 TAF15b not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0030906 retromer, cargo-selective complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 360 389
IPR001876 Znf_RanBP2 56 86
No external refs found!