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  5. Len_g19487

Len_g19487


Description : not classified & original description: none


Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g19487

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00225p00023630 No alias Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder output from all 47 species
AT1G01370 HTR12, CENH3 Histone superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G40040 No alias Histone superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g010032 No alias histone H3 variant *(CENH3) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g113412 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g01156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01982.t1 Aspi01Gene01982 histone *(H3) & original description: none 0.04 OrthoFinder output from all 47 species
Cre06.g267950 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g274000 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g274101 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g274350 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g274850 No alias Chromatin organisation.histones.H3-type histone 0.03 OrthoFinder output from all 47 species
Cre06.g275750 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre06.g276850 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre13.g569950 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
Cre17.g708700 No alias Chromatin organisation.histones.H3-type histone 0.02 OrthoFinder output from all 47 species
MA_475294g0010 No alias histone (H3) 0.02 OrthoFinder output from all 47 species
Pnu_g01476 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c20_8550V3.1 Pp3c20_8550 Histone superfamily protein 0.02 OrthoFinder output from all 47 species
Sam_g15174 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g051500.4.1 Solyc05g051500 histone (H3) 0.04 OrthoFinder output from all 47 species
Solyc11g010230.2.1 Solyc11g010230 histone (H3) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 25 140
No external refs found!