Len_g11361

Description : component *(uS5) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001457 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001457_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g11361

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00212950	XW6,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
AT1G58380	XW6	Ribosomal protein S5 family protein	0.04	OrthoFinder output from all 47 species
AT2G41840	No alias	Ribosomal protein S5 family protein	0.03	OrthoFinder output from all 47 species
AT3G57490	No alias	Ribosomal protein S5 family protein	0.02	OrthoFinder output from all 47 species
Adi_g075066	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g075067	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ala_g12737	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Als_g12987	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g09364	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aspi01Gene20101.t1	Aspi01Gene20101	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0110.g045473	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0377.g067313	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cba_g21907	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g21908	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.30G013900.1	Ceric.30G013900	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ceric.31G046200.1	Ceric.31G046200	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020961.135	XW6	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Cre01.g039250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Dac_g00614	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g05423	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01033299001	No alias	40S ribosomal protein S2-4 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Gb_04606	No alias	component RPS2 of SSU proteome	0.03	OrthoFinder output from all 47 species
Gb_04608	No alias	component RPS2 of SSU proteome	0.04	OrthoFinder output from all 47 species
Gb_04609	No alias	component RPS2 of SSU proteome	0.04	OrthoFinder output from all 47 species
LOC_Os03g59310.1	LOC_Os03g59310	component RPS2 of SSU proteome	0.08	OrthoFinder output from all 47 species
LOC_Os07g10660.1	LOC_Os07g10660	component RPS2 of SSU proteome	0.04	OrthoFinder output from all 47 species
Lfl_g25707	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
MA_158470g0010	No alias	component RPS2 of SSU proteome	0.02	OrthoFinder output from all 47 species
Mp5g04380.1	No alias	component RPS2 of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp5g05010.1	No alias	component RPS2 of SSU proteome	0.02	OrthoFinder output from all 47 species
Mp5g15970.1	No alias	component RPS2 of SSU proteome	0.05	OrthoFinder output from all 47 species
Msp_g07675	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Msp_g10873	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g03400	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g03516	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pnu_g09118	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pp3c20_18740V3.1	Pp3c20_18740	Ribosomal protein S5 family protein	0.03	OrthoFinder output from all 47 species
Pp3c24_5780V3.1	Pp3c24_5780	Ribosomal protein S5 family protein	0.02	OrthoFinder output from all 47 species
Ppi_g24410	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g25636	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sam_g26796	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Smo67484	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Solyc04g063290.3.1	Solyc04g063290	component RPS2 of SSU proteome	0.05	OrthoFinder output from all 47 species
Solyc04g074300.3.1	Solyc04g074300	component RPS2 of SSU proteome	0.05	OrthoFinder output from all 47 species
Spa_g13171	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Spa_g14513	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Spa_g38186	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Spa_g40249	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Spa_g47984	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Spa_g50366	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e006090_P001	Zm00001e006090	component RPS2 of SSU proteome	0.02	OrthoFinder output from all 47 species
Zm00001e011816_P001	Zm00001e011816	component RPS2 of SSU proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006534	cysteine metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009069	serine family amino acid metabolic process	IEP	HCCA
BP	GO:0009092	homoserine metabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019346	transsulfuration	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0050667	homocysteine metabolic process	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005324	Ribosomal_S5_C	165	237
IPR013810	Ribosomal_S5_N	81	145

External Links

No external refs found!

Len_g11361

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation