Len_g04338

Description : not classified & original description: none

Gene families : OG0002290 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002290_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g04338
Cluster	HCCA: Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00008p00109510	evm_27.TU.AmTr_v1...	Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera	0.05	OrthoFinder output from all 47 species
Ala_g02382	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g02197	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g04580	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Ceric.02G059400.1	Ceric.02G059400	not classified & original description: pacid=50584081...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021127.140	No alias	Translation factor GUF1 homolog, mitochondrial OS=Sorghum bicolor	0.01	OrthoFinder output from all 47 species
Cre03.g165000	No alias	Translation factor GUF1 homolog, chloroplastic...	0.03	OrthoFinder output from all 47 species
Dde_g11300	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g10737	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01022409001	No alias	Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera	0.06	OrthoFinder output from all 47 species
LOC_Os02g06300.1	LOC_Os02g06300	Translation factor GUF1 homolog, chloroplastic OS=Oryza...	0.04	OrthoFinder output from all 47 species
Lfl_g03115	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Mp7g18810.1	No alias	Translation factor GUF1 homolog, chloroplastic OS=Vitis...	0.03	OrthoFinder output from all 47 species
Nbi_g10787	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g19015	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g09463	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Pir_g18021	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo407721	No alias	Translation factor GUF1 homolog, chloroplastic OS=Oryza...	0.03	OrthoFinder output from all 47 species
Solyc04g015450.3.1	Solyc04g015450	Translation factor GUF1 homolog, chloroplastic...	0.02	OrthoFinder output from all 47 species
Spa_g04229	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Zm00001e025200_P002	Zm00001e025200	Translation factor GUF1 homolog, chloroplastic OS=Oryza...	0.05	OrthoFinder output from all 47 species
Zm00001e036519_P002	Zm00001e036519	Translation factor GUF1 homolog, mitochondrial...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000795	T_Tr_GTP-bd_dom	96	274
IPR000640	EFG_V-like	492	578
IPR004161	EFTu-like_2	298	368
IPR013842	LepA_CTD	581	687

External Links

No external refs found!

Len_g04338

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation