Len_g03057

Description : component *(uS19) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0002650 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002650_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Len_g03057

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00076070	RPS15,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AT1G04270	RPS15	cytosolic ribosomal protein S15	0.03	OrthoFinder output from all 47 species
AT5G09510	No alias	Ribosomal protein S19 family protein	0.04	OrthoFinder output from all 47 species
Adi_g040175	RPS15	component *(uS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Adi_g085505	RPS15	component *(uS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Adi_g120609	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020830.61	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Cre08.g360900	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01000754001	RPS15	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
GSVIVT01018113001	RPS15	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
LOC_Os03g58430.1	LOC_Os03g58430	component RPS15 of SSU proteome	0.02	OrthoFinder output from all 47 species
LOC_Os07g08660.1	LOC_Os07g08660	component RPS15 of SSU proteome	0.03	OrthoFinder output from all 47 species
Lfl_g24533	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
MA_14543g0010	No alias	component RPS15 of SSU proteome	0.02	OrthoFinder output from all 47 species
Mp3g15000.1	No alias	component RPS15 of SSU proteome	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015225	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g38072	No alias	component *(uS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Smo172403	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
Solyc02g082000.3.1	RPS15, Solyc02g082000	component RPS15 of SSU proteome	0.03	OrthoFinder output from all 47 species
Solyc09g083370.3.1	RPS15, Solyc09g083370	component RPS15 of SSU proteome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0010921	regulation of phosphatase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051336	regulation of hydrolase activity	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002222	Ribosomal_S19	56	141

External Links

No external refs found!

Len_g03057

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation