Len_g02693


Description : not classified & original description: none


Gene families : OG0001091 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001091_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Len_g02693
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
Adi_g021226 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20782.t1 Aspi01Gene20782 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G065800.1 Ceric.05G065800 not classified & original description: pacid=50578796... 0.03 OrthoFinder output from all 47 species
Ceric.23G017500.1 Ceric.23G017500 not classified & original description: pacid=50610807... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008115 No alias not classified & original description: CDS=54-1049 0.03 OrthoFinder output from all 47 species
Sam_g14157 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g00945 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15539 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002347 SDR_fam 42 250
No external refs found!