Description : not classified & original description: none
Gene families : OG0001091 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001091_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Len_g02693 | |
Cluster | HCCA: Cluster_138 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Adi_g021226 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aop_g02042 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene20782.t1 | Aspi01Gene20782 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g04474 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ceric.05G065800.1 | Ceric.05G065800 | not classified & original description: pacid=50578796... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.23G017500.1 | Ceric.23G017500 | not classified & original description: pacid=50610807... | 0.04 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0020.g008115 | No alias | not classified & original description: CDS=54-1049 | 0.03 | OrthoFinder output from all 47 species | |
Sam_g14157 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Spa_g00945 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Spa_g15539 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Tin_g04925 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000347 | THO complex | IEP | HCCA |
CC | GO:0000445 | THO complex part of transcription export complex | IEP | HCCA |
MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005737 | cytoplasm | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0006888 | endoplasmic reticulum to Golgi vesicle-mediated transport | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
BP | GO:0016192 | vesicle-mediated transport | IEP | HCCA |
CC | GO:0016592 | mediator complex | IEP | HCCA |
MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | HCCA |
MF | GO:0019843 | rRNA binding | IEP | HCCA |
CC | GO:0030117 | membrane coat | IEP | HCCA |
CC | GO:0030120 | vesicle coat | IEP | HCCA |
CC | GO:0030127 | COPII vesicle coat | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0048193 | Golgi vesicle transport | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002347 | SDR_fam | 42 | 250 |
No external refs found! |