Nbi_g26063

Description : not classified & original description: none

Gene families : OG0002233 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002233_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g26063
Cluster	HCCA: Cluster_165

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00265580	evm_27.TU.AmTr_v1...	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
AMTR_s00018p00168540	evm_27.TU.AmTr_v1...	DNA mismatch repair protein MSH1, mitochondrial...	0.03	OrthoFinder output from all 47 species
AT1G65070	No alias	DNA mismatch repair protein MutS, type 2	0.02	OrthoFinder output from all 47 species
Aob_g04468	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g07025	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g11010	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Azfi_s0068.g036437	No alias	not classified & original description: CDS=249-2714	0.02	OrthoFinder output from all 47 species
Cba_g24484	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g25384	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.34G068900.1	Ceric.34G068900	not classified & original description: pacid=50624175...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020629.147	No alias	No description available	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020629.149	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dde_g00918	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g12779	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os10g36530.1	LOC_Os10g36530	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Len_g03377	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g02342	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
MA_263724g0010	No alias	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Mp2g11550.1	No alias	DNA mismatch repair protein MSH1, mitochondrial...	0.03	OrthoFinder output from all 47 species
Ore_g15710	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g59488	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g06740	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g13786	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g16282	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g47688	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e012571_P001	Zm00001e012571	DNA mismatch repair protein MSH1, mitochondrial...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
MF	GO:0008113	peptide-methionine (S)-S-oxide reductase activity	IEP	HCCA
MF	GO:0008942	nitrite reductase [NAD(P)H] activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0098809	nitrite reductase activity	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000432	DNA_mismatch_repair_MutS_C	460	645

External Links

No external refs found!

Nbi_g26063

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation