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  5. Nbi_g16901

Nbi_g16901


Description : not classified & original description: none


Gene families : OG0000043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g16901

Target Alias Description ECC score Gene Family Method Actions
Adi_g014373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018506 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057084 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g30236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38619 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07076 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07485 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19286 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55317 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g58990 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09010 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g31319 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g31791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0131.g049164 No alias not classified & original description: CDS=1-2763 0.02 OrthoFinder output from all 47 species
Azfi_s0250.g060258 No alias not classified & original description: CDS=1-1893 0.02 OrthoFinder output from all 47 species
Azfi_s0345.g065805 No alias not classified & original description: CDS=1-2679 0.02 OrthoFinder output from all 47 species
Azfi_s0469.g072874 CRR22 not classified & original description: CDS=1-1206 0.02 OrthoFinder output from all 47 species
Azfi_s1399.g102577 No alias not classified & original description: CDS=1-951 0.02 OrthoFinder output from all 47 species
Cba_g07456 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07596 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20867 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34890 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G020600.1 Ceric.05G020600 ssDNA-binding protein *(OSB) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.37G043200.1 Ceric.37G043200 not classified & original description: pacid=50616612... 0.02 OrthoFinder output from all 47 species
Dac_g23398 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g35455 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g44957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g01720 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g02346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02401 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25062 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26582 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47619 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g09251 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g10732 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Len_g12066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14727 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18052 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g22449 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g33280 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g58364 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g04235 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g04282 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05014 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05736 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06269 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g06274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09544 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12538 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g13214 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g27953 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23878 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g26164 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31946 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45899 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g48641 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17001 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12601 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g18166 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g19560 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g02334 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03867 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03887 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05188 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g55179 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013947 No alias not classified & original description: CDS=131-3355 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0202.g025642 No alias not classified & original description: CDS=1-1872 0.03 OrthoFinder output from all 47 species
Sam_g23060 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g24544 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27503 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g04234 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g08784 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18112 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51149 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g09995 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 193 236
IPR046848 E_motif 856 892
IPR002885 Pentatricopeptide_repeat 264 290
IPR002885 Pentatricopeptide_repeat 292 321
IPR002885 Pentatricopeptide_repeat 813 838
IPR002885 Pentatricopeptide_repeat 613 635
IPR002885 Pentatricopeptide_repeat 741 771
IPR002885 Pentatricopeptide_repeat 381 402
IPR002885 Pentatricopeptide_repeat 525 554
IPR002885 Pentatricopeptide_repeat 494 518
IPR002885 Pentatricopeptide_repeat 638 684
IPR002885 Pentatricopeptide_repeat 407 453
No external refs found!