Nbi_g15154

Description : large subunit beta of AP-4 vacuole cargo adaptor complex & original description: none

Gene families : OG0001612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001612_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g15154
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
AT4G23460	No alias	Adaptin family protein	0.02	OrthoFinder output from all 47 species
AT5G11490	No alias	adaptin family protein	0.04	OrthoFinder output from all 47 species
Ala_g15640	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.05	OrthoFinder output from all 47 species
Ala_g16231	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.06	OrthoFinder output from all 47 species
Aop_g04473	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.07	OrthoFinder output from all 47 species
Ceric.37G056900.1	Ceric.37G056900	large subunit beta of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020592.39	No alias	No description available	0.01	OrthoFinder output from all 47 species
Cre05.g234665	No alias	Vesicle trafficking.endomembrane trafficking.vacuolar...	0.07	OrthoFinder output from all 47 species
Cre11.g478156	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.06	OrthoFinder output from all 47 species
Dcu_g01903	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.05	OrthoFinder output from all 47 species
Dcu_g07725	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.08	OrthoFinder output from all 47 species
Dde_g06808	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.03	OrthoFinder output from all 47 species
GSVIVT01019391001	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.04	OrthoFinder output from all 47 species
Gb_11857	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.04	OrthoFinder output from all 47 species
LOC_Os01g43630.1	LOC_Os01g43630	large subunit beta of AP-4 vacuole cargo adaptor complex	0.03	OrthoFinder output from all 47 species
LOC_Os03g23950.1	LOC_Os03g23950	large subunit beta of AP-1 trans-Golgi network cargo...	0.04	OrthoFinder output from all 47 species
Lfl_g02298	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species
Lfl_g05633	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.03	OrthoFinder output from all 47 species
MA_10436050g0010	No alias	Beta-adaptin-like protein C OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Mp1g25810.1	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.07	OrthoFinder output from all 47 species
Mp6g09050.1	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex	0.04	OrthoFinder output from all 47 species
Msp_g00711	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.09	OrthoFinder output from all 47 species
Msp_g04742	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.03	OrthoFinder output from all 47 species
Ore_g18294	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.02	OrthoFinder output from all 47 species
Ppi_g52666	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005044	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.03	OrthoFinder output from all 47 species
Smo269184	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.02	OrthoFinder output from all 47 species
Smo269763	No alias	Vesicle trafficking.endomembrane trafficking.vacuolar...	0.05	OrthoFinder output from all 47 species
Solyc08g081320.3.1	Solyc08g081320	large subunit beta of AP-1 trans-Golgi network cargo...	0.03	OrthoFinder output from all 47 species
Spa_g12477	No alias	large subunit beta of AP-1 trans-Golgi network cargo...	0.07	OrthoFinder output from all 47 species
Spa_g16508	No alias	large subunit beta of AP-4 vacuole cargo adaptor complex...	0.03	OrthoFinder output from all 47 species
Zm00001e001693_P001	Zm00001e001693	large subunit beta of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species
Zm00001e020411_P002	Zm00001e020411	large subunit beta of AP-4 vacuole cargo adaptor complex	0.02	OrthoFinder output from all 47 species
Zm00001e027916_P001	Zm00001e027916	large subunit beta of AP-4 vacuole cargo adaptor complex	0.05	OrthoFinder output from all 47 species
Zm00001e038184_P001	Zm00001e038184	large subunit beta of AP-1 trans-Golgi network cargo...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030119	AP-type membrane coat adaptor complex	None	Extended
CC	GO:0030131	clathrin adaptor complex	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000275	mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
CC	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002553	Clathrin/coatomer_adapt-like_N	38	551
IPR015151	B-adaptin_app_sub_C	718	833

External Links

No external refs found!

Nbi_g15154

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation