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  5. Nbi_g11981

Nbi_g11981 (VPS35B)


Aliases : VPS35B

Description : component *(VPS35) of Retromer protein recycling complex & original description: none


Gene families : OG0003496 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003496_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g11981
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AT2G17790 ZIP3, VPS35A VPS35 homolog A 0.05 OrthoFinder output from all 47 species
Aop_g01821 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.07 OrthoFinder output from all 47 species
Ceric.32G026000.1 VPS35B, Ceric.32G026000 component *(VPS35) of Retromer protein recycling complex... 0.05 OrthoFinder output from all 47 species
Cre01.g029650 ZIP3, VPS35A Vesicle trafficking.endomembrane trafficking.protein... 0.02 OrthoFinder output from all 47 species
Dcu_g44008 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.13 OrthoFinder output from all 47 species
LOC_Os03g58700.1 VPS35B, LOC_Os03g58700 component VPS35 of Retromer protein recycling complex 0.06 OrthoFinder output from all 47 species
Lfl_g08397 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.03 OrthoFinder output from all 47 species
Msp_g00699 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007522 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.03 OrthoFinder output from all 47 species
Sam_g29536 No alias component *(VPS35) of Retromer protein recycling complex... 0.02 OrthoFinder output from all 47 species
Solyc02g083560.3.1 ZIP3, VPS35A,... component VPS35 of Retromer protein recycling complex 0.04 OrthoFinder output from all 47 species
Spa_g15075 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.03 OrthoFinder output from all 47 species
Tin_g02135 VPS35B component *(VPS35) of Retromer protein recycling complex... 0.03 OrthoFinder output from all 47 species
Zm00001e006031_P002 VPS35B, Zm00001e006031 component VPS35 of Retromer protein recycling complex 0.04 OrthoFinder output from all 47 species
Zm00001e011849_P003 VPS35B, Zm00001e011849 component VPS35 of Retromer protein recycling complex 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0015031 protein transport IEA Interproscan
CC GO:0030906 retromer, cargo-selective complex IEA Interproscan
BP GO:0042147 retrograde transport, endosome to Golgi IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR005378 Vps35 18 754
No external refs found!