Nbi_g08780 (CRM3, HCF152)


Aliases : CRM3, HCF152

Description : not classified & original description: none


Gene families : OG0004023 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004023_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g08780

Target Alias Description ECC score Gene Family Method Actions
Adi_g012590 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g017907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08664 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12875 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g16234 CRM3, HCF152 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10416 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g21149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g15637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16137.t1 Aspi01Gene16137 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G037000.1 Ceric.12G037000 not classified & original description: pacid=50600637... 0.05 OrthoFinder output from all 47 species
Ceric.1Z219100.1 Ceric.1Z219100 not classified & original description: pacid=50617071... 0.07 OrthoFinder output from all 47 species
Ceric.23G078700.1 Ceric.23G078700 not classified & original description: pacid=50610433... 0.03 OrthoFinder output from all 47 species
Dac_g16300 CRM3, HCF152 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g23808 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g15035 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Dcu_g23419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14876 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g38642 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g06340 CRM3, HCF152 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g13290 EMB2279, EMB88 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g14407 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37245 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g45697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15086 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g31150 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 505 552
IPR002885 Pentatricopeptide_repeat 282 335
IPR002885 Pentatricopeptide_repeat 408 432
IPR002885 Pentatricopeptide_repeat 475 503
IPR002885 Pentatricopeptide_repeat 439 460
No external refs found!