Aliases : STM, SHM1, SHMT1
Description : EC_2.1 transferase transferring one-carbon group & original description: none
Gene families : OG0000518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000518_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Nbi_g03063 | |
Cluster | HCCA: Cluster_165 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00046p00219150 | STM, SHM1,... | Photosynthesis.photorespiration.serine hydroxymethyltransferase | 0.12 | OrthoFinder output from all 47 species | |
AT4G37930 | STM, SHM1, SHMT1 | serine transhydroxymethyltransferase 1 | 0.21 | OrthoFinder output from all 47 species | |
Adi_g035671 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.03 | OrthoFinder output from all 47 species | |
Adi_g081286 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.05 | OrthoFinder output from all 47 species | |
Aev_g09895 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.06 | OrthoFinder output from all 47 species | |
Ala_g06665 | SHM7 | EC_2.1 transferase transferring one-carbon group &... | 0.02 | OrthoFinder output from all 47 species | |
Ala_g06688 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.16 | OrthoFinder output from all 47 species | |
Als_g06300 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.14 | OrthoFinder output from all 47 species | |
Aob_g16059 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.09 | OrthoFinder output from all 47 species | |
Aop_g11376 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.17 | OrthoFinder output from all 47 species | |
Aspi01Gene56437.t1 | STM, SHM1,... | EC_2.1 transferase transferring one-carbon group &... | 0.08 | OrthoFinder output from all 47 species | |
Azfi_s0102.g044437 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.12 | OrthoFinder output from all 47 species | |
Cba_g12674 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.11 | OrthoFinder output from all 47 species | |
Ceric.28G027700.1 | STM, SHM1,... | EC_2.1 transferase transferring one-carbon group &... | 0.15 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000144.148 | STM, SHM1, SHMT1 | Enzyme classification.EC_2 transferases.EC_2.1... | 0.01 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001130.31 | SHM4 | Enzyme classification.EC_2 transferases.EC_2.1... | 0.05 | OrthoFinder output from all 47 species | |
Dac_g28484 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.12 | OrthoFinder output from all 47 species | |
Dcu_g14554 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.14 | OrthoFinder output from all 47 species | |
Dcu_g21464 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.1 | OrthoFinder output from all 47 species | |
Dde_g12981 | SHM7 | EC_2.1 transferase transferring one-carbon group &... | 0.01 | OrthoFinder output from all 47 species | |
Dde_g20927 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.12 | OrthoFinder output from all 47 species | |
Ehy_g16256 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.08 | OrthoFinder output from all 47 species | |
GSVIVT01003859001 | STM, SHM1, SHMT1 | Photosynthesis.photorespiration.serine hydroxymethyltransferase | 0.13 | OrthoFinder output from all 47 species | |
GSVIVT01003862001 | STM, SHM1, SHMT1 | Serine hydroxymethyltransferase, mitochondrial... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os03g52840.1 | STM, SHM1,... | serine hydroxymethyltransferase | 0.12 | OrthoFinder output from all 47 species | |
Len_g12401 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.21 | OrthoFinder output from all 47 species | |
Len_g48106 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g04055 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.09 | OrthoFinder output from all 47 species | |
MA_99276g0010 | STM, SHM1, SHMT1 | serine hydroxymethyltransferase | 0.12 | OrthoFinder output from all 47 species | |
Mp2g08370.1 | STM, SHM1, SHMT1 | serine hydroxymethyltransferase | 0.09 | OrthoFinder output from all 47 species | |
Msp_g48544 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.21 | OrthoFinder output from all 47 species | |
Ore_g09056 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.13 | OrthoFinder output from all 47 species | |
Pir_g00993 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.1 | OrthoFinder output from all 47 species | |
Pnu_g10887 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.12 | OrthoFinder output from all 47 species | |
Pp3c1_27990V3.1 | STM, SHM1,... | serine transhydroxymethyltransferase 1 | 0.01 | OrthoFinder output from all 47 species | |
Ppi_g14402 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.06 | OrthoFinder output from all 47 species | |
Sam_g36946 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.06 | OrthoFinder output from all 47 species | |
Sam_g48680 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.02 | OrthoFinder output from all 47 species | |
Smo270566 | STM, SHM1, SHMT1 | Photosynthesis.photorespiration.serine hydroxymethyltransferase | 0.11 | OrthoFinder output from all 47 species | |
Solyc02g091560.3.1 | STM, SHM1,... | serine hydroxymethyltransferase | 0.16 | OrthoFinder output from all 47 species | |
Spa_g16771 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.04 | OrthoFinder output from all 47 species | |
Tin_g10060 | STM, SHM1, SHMT1 | EC_2.1 transferase transferring one-carbon group &... | 0.17 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0003674 | molecular_function | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
MF | GO:0004751 | ribose-5-phosphate isomerase activity | IEP | HCCA |
MF | GO:0005216 | monoatomic ion channel activity | IEP | HCCA |
MF | GO:0005261 | monoatomic cation channel activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
BP | GO:0006091 | generation of precursor metabolites and energy | IEP | HCCA |
BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0006508 | proteolysis | IEP | HCCA |
BP | GO:0006536 | glutamate metabolic process | IEP | HCCA |
BP | GO:0006537 | glutamate biosynthetic process | IEP | HCCA |
BP | GO:0006754 | ATP biosynthetic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
BP | GO:0009052 | pentose-phosphate shunt, non-oxidative branch | IEP | HCCA |
BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | HCCA |
BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | HCCA |
BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
CC | GO:0009521 | photosystem | IEP | HCCA |
CC | GO:0009523 | photosystem II | IEP | HCCA |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
MF | GO:0015078 | proton transmembrane transporter activity | IEP | HCCA |
MF | GO:0015252 | proton channel activity | IEP | HCCA |
MF | GO:0015930 | glutamate synthase activity | IEP | HCCA |
BP | GO:0015979 | photosynthesis | IEP | HCCA |
BP | GO:0015986 | proton motive force-driven ATP synthesis | IEP | HCCA |
MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | HCCA |
MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | HCCA |
MF | GO:0016787 | hydrolase activity | IEP | HCCA |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | HCCA |
MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | HCCA |
MF | GO:0016903 | oxidoreductase activity, acting on the aldehyde or oxo group of donors | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | HCCA |
CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
CC | GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | HCCA |
BP | GO:0043650 | dicarboxylic acid biosynthetic process | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
CC | GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) | IEP | HCCA |
BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
MF | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | IEP | HCCA |
MF | GO:0050661 | NADP binding | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
CC | GO:0098796 | membrane protein complex | IEP | HCCA |
BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
BP | GO:1901605 | alpha-amino acid metabolic process | IEP | HCCA |
BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | HCCA |
CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR039429 | SHMT-like_dom | 60 | 457 |
No external refs found! |