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  5. Nbi_g03053

Nbi_g03053


Description : substrate adaptor *(SKIP35) of SCF E3 ubiquitin ligase complex & original description: none


Gene families : OG0002829 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002829_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g03053
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
Als_g03239 No alias substrate adaptor *(SKIP35) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Als_g13562 No alias substrate adaptor *(SKIP35) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aob_g08441 No alias substrate adaptor *(SKIP35) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Aop_g04841 No alias substrate adaptor *(SKIP35) of SCF E3 ubiquitin ligase... 0.05 OrthoFinder output from all 47 species
Aop_g18704 No alias substrate adaptor *(SKIP35) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Cba_g13651 No alias substrate adaptor *(SKIP35) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Ehy_g03905 No alias substrate adaptor *(SKIP35) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Len_g12399 No alias substrate adaptor *(SKIP35) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Lfl_g15297 No alias substrate adaptor *(SKIP35) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Msp_g10987 No alias substrate adaptor *(SKIP35) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Solyc12g017540.2.1 Solyc12g017540 Ankyrin repeat protein SKIP35 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g50178 No alias substrate adaptor *(SKIP35) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!