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Aliases : UPF1, ATUPF1, LBA1
Description : not classified & original description: none
Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00071p00142490 | UPF1, ATUPF1,... | RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g042703 | UPF1, ATUPF1, LBA1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g27467 | UPF1, ATUPF1, LBA1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g15234 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g22322 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g14327 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g36240 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g60010 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.14G043100.1 | UPF1, ATUPF1,... | not classified & original description: pacid=50633274... | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g51663 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g19605 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os07g31340.1 | UPF1, ATUPF1,... | UPF1 Nonsense-Mediated mRNA Decay effector protein | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g52670 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g10496 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g29675 | No alias | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc08g007110.4.1 | UPF1, ATUPF1,... | UPF1 Nonsense-Mediated mRNA Decay effector protein | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000105 | histidine biosynthetic process | IEP | HCCA |
| MF | GO:0000287 | magnesium ion binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0004637 | phosphoribosylamine-glycine ligase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006144 | purine nucleobase metabolic process | IEP | HCCA |
| BP | GO:0006166 | purine ribonucleoside salvage | IEP | HCCA |
| BP | GO:0006190 | inosine salvage | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006547 | histidine metabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0006813 | potassium ion transport | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| MF | GO:0008252 | nucleotidase activity | IEP | HCCA |
| MF | GO:0008253 | 5'-nucleotidase activity | IEP | HCCA |
| BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009112 | nucleobase metabolic process | IEP | HCCA |
| BP | GO:0009113 | purine nucleobase biosynthetic process | IEP | HCCA |
| BP | GO:0009116 | nucleoside metabolic process | IEP | HCCA |
| BP | GO:0009119 | ribonucleoside metabolic process | IEP | HCCA |
| BP | GO:0009163 | nucleoside biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| MF | GO:0015079 | potassium ion transmembrane transporter activity | IEP | HCCA |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016791 | phosphatase activity | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0030001 | metal ion transport | IEP | HCCA |
| BP | GO:0031123 | RNA 3'-end processing | IEP | HCCA |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| BP | GO:0034220 | monoatomic ion transmembrane transport | IEP | HCCA |
| BP | GO:0034404 | nucleobase-containing small molecule biosynthetic process | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0042278 | purine nucleoside metabolic process | IEP | HCCA |
| BP | GO:0042451 | purine nucleoside biosynthetic process | IEP | HCCA |
| BP | GO:0042455 | ribonucleoside biosynthetic process | IEP | HCCA |
| MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | HCCA |
| BP | GO:0043094 | cellular metabolic compound salvage | IEP | HCCA |
| BP | GO:0043101 | purine-containing compound salvage | IEP | HCCA |
| MF | GO:0043138 | 3'-5' DNA helicase activity | IEP | HCCA |
| BP | GO:0043174 | nucleoside salvage | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| BP | GO:0044283 | small molecule biosynthetic process | IEP | HCCA |
| BP | GO:0046102 | inosine metabolic process | IEP | HCCA |
| BP | GO:0046103 | inosine biosynthetic process | IEP | HCCA |
| BP | GO:0046112 | nucleobase biosynthetic process | IEP | HCCA |
| BP | GO:0046128 | purine ribonucleoside metabolic process | IEP | HCCA |
| BP | GO:0046129 | purine ribonucleoside biosynthetic process | IEP | HCCA |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0050483 | IMP 5'-nucleotidase activity | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0071805 | potassium ion transmembrane transport | IEP | HCCA |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:0098655 | monoatomic cation transmembrane transport | IEP | HCCA |
| BP | GO:0098660 | inorganic ion transmembrane transport | IEP | HCCA |
| BP | GO:0098662 | inorganic cation transmembrane transport | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| BP | GO:1901657 | glycosyl compound metabolic process | IEP | HCCA |
| BP | GO:1901659 | glycosyl compound biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR041679 | DNA2/NAM7-like_C | 3 | 61 |
| No external refs found! |